| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2968 |
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| Symbol | |
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| ID | 8133923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3352138 |
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| End bp | 3355218 |
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| Gene Length | 3081 bp |
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| Protein Length | 1026 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644866251 |
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| Product | multidrug efflux system subunit MdtC |
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| Protein accession | YP_003018527 |
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| Protein GI | 253689337 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGTTCT TCGCCCTGTT CATCCACCGC CCCGTCGCCA CTCTGCTGCT GACGCTGGCC
ATCGCGCTCT GTGGCGTACT GGGTTTCCGC CTGTTGCCGG TGTCGCCGCT GCCGCAGGTG
GATTTCCCGG TGATTTCGGT CAGCGCTTCA CTGCCTGGTG CCTCGCCGGA AACGATGGCC
TCCGCCGTCG CGACGCCGCT GGAACGGGCG CTCGGCAGGA TCGCAGGCGT CAGCGAAATG
ACCTCAACTA GCTCGCTCGG TAGCACGCGC GTCATTCTGG TGTTTAACCT CGATCGCGAT
ATCAACGGCG CAGCGCGCGA TGTGCAGGCG GCCATCAACG CGGCACAGAA CCTGCTGCCG
TCCGGCATGT CCAGCCGACC GACCTACCGC AAAGTCAATC CGTCCGACGC GCCCGTCATG
ATCCTGACGC TGACCTCGGA CACCTACAGT CAGGGGCAGC TGTACGACTT TGCCTCGACC
CAACTGTCAC AGAAAATTTC GCAGATGGAA GGCGTCGGCG ATGTCTCCAT CGGCGGGAGT
TCCCTCCCCG CCGTGCGCGT CGCGCTGAAT CCAGTAGCGC TGTTTAATCA GGGTATTTCC
CTCGATGAGG TACGGCAGGC TATCGCGCAG GCAAACGTCC GCCAGCCGCT GGGGAATGTG
GAAAACAGCC AGAAAAGCTG GCAAATAAAA ACCAACGATG AGCTAAAAAC CGCCGATGCC
TACGCGCCGC TGATTATCCA TTACAACAAC GGCGCTGCCG TCCGCCTGAG CGATGTCGCC
ACGGTGGAAG ATTCAGTGCA GAATTCCCGT AACGCGGGGA TGGCGAATGC AAAGCCCGCG
ATTCTGGTGA TGATTCGTCG CGCGCCGGAT GCCAACATTA TTACTACCGT AGACAATATC
CGCGCCGCCA TGCCGGAGCT GCGTGCCAGC CTGCCTGCTG AAATACAGCT GGATGTCGCA
CAGGATCGTT CCCCCACCAT CCGGGCATCG CTGGCGGAAG TGGAACAATC GCTGGTTATC
GCCGTTGCGC TGGTTATTCT GGTCGTCTTC CTGTTCCTGC GTTCCGGCCG TGCCACCGCC
ATTCCGGCGC TGGCCGTACC GGTATCACTG ATCGGCACCT TCGCGGCGAT GTACCTGTGC
GGCTTTAGCC TGAACAACCT GTCGCTGATG GCGCTGACCA TTGCCACCGG TTTCGTGGTG
GATGACGCTA TCGTGGTGCT GGAGAATATT TCCCGCCATA TCGAAGCGGG TATGAAGCCG
CTCCAGGCGT CACTTCAGGG CGTGCGCGAA GTGGGGTTCA CCGTCTTATC CATGAGTCTG
TCGCTGGTTG CGGTGTTCAT CCCGCTCCTG TTGATGGAGG GCTTACCGGG GCGGCTATTC
CGCGAGTTCG CCGTCACGCT GTCGGTGGCG ATCATGATTT CGCTGCTGAT CTCGCTCACG
CTTACGCCGA TGCTGTGCGC ACGACTGCTG CGTGCCGTAC CCAAACGCAG CCAGCCGCGC
AAGCAAGGTT TTAACCGCGT CCTGCTGGCG ATGCAGCAAG GCTACGGGCG ATCGCTGAAA
TGGGTGCTCA ACCATGCACG CTGGGTGTTG CTGCTTTTGC TGGGCACCAT CGCGCTCAAC
GTCTGGCTAT ATATCAGCAT TCCGAAAACC TTCTTCCCTG AGCAGGATAC GGGCCGGCTG
ATGGGGTTTA TTCAGGCTGA CCAGAGTATT TCTTTTCAGG CCATGACGGT GAAACTCCAG
AACTTCATGA CCATTGTCAG CAGCGACCCG GCGGTGGATA ACGTTAACGG ATTTACCGGC
GGATCGCGCA CCAACAGCGG TTCGATGTTT ATTTCGCTTA AGCCGCTGTC CGAACGCGAT
GTGTCGGCAC AGCAGGTCAT CAGCCGCCTA CGCATCAAGC TGGCAAAAGA ACCCGGCGCT
AACCTGTTTT TAATGCCAGT ACAGGATATT CGCATCGGCG GACGGGAAGC GAACGCCGGG
TATCAGTACA CGCTGCTGTC TGACGATTTA AGCGAACTGC GTACCTGGGA ACCCAAAATT
CGTGCAGCTT TCAGCAAACT GCCTGAACTG GCCGATGTGA ACTCCGATCA GCAGGATAAA
GGCGCAGAAA TGGCGCTAAC CTACGATCGT GATGCGATGG CGCAGCTCGG CATCAGCGTC
TCTGCCGTCA ATGCACTGCT CAATAACGCC TTCGGACAGC GTCAGATTTC AACCATTTAC
CAGCCGTTAA ACCAATATAA AGTGGTGATG GAAGTGGATG ACGCCTACAC GCAGGATGTC
AGTTCACTGA ACAAGATGTT CGTGATCAAC AGCGAGGGTA AACCCATCCC GCTCTCTTAT
TTCGCCAGTT GGAAGCCAAT CAACGCACCG CTGTCGGTGA ACCATCAGGG GTTGTCAGCT
GCCTCAACCA TCTCTTTCAA CCTGCCGGAA GGCACCGATC TGTCCAGCGC GACGGCGGCA
ATAGAAAGAA CCATGACATC GCTGGGCGTG CCGTCAGCGG TACGTGGTCA GTTCTCCGGT
ACGGCACAGG CGTTCCAGCA GTCGCAGTCT TCCCAGCTGT TGCTGATTCT GGCGGCGATT
ATCACCGTGT ATATCGTGCT GGGCGTGTTG TATGAGAGCT ACGTGCATCC GCTGACGATT
CTGTCCACCC TGCCCTCGGC TGGCGTGGGA GCGCTGTTGG CGCTGGAATG GTTCGGCGCG
CCGTTTAGTC TGGTGGCGCT GATTGGTATC ATGCTGCTGA TTGGGATCGT GAAGAAGAAC
GCGATCATGA TGGTGGATTT CGCGCTGGTG GCACAGCGCA GCGGCAAGCT GAGCGCGCAG
GACGCGATTT TCCAGGCCTG CCTGCTGCGT TTCCGCCCGA TTATGATGAC CACCTTAGCC
GCGCTGTTTG GCGCACTGCC GCTGGTACTG ACCAGCGGCG ACGGTGCAGA ACTGCGACAG
CCACTCGGCA TCACGATCGT CGGCGGGCTG GTGATGAGCC AAATCCTCAC GCTGTACACG
ACCCCGGTGG TGTATCTGTT TTTCGACAAG CTGAGGAATA TTCGGCGCAA AGCACCGGAG
AGGGATGTGT CACTGTCATA G
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| Protein sequence | MKFFALFIHR PVATLLLTLA IALCGVLGFR LLPVSPLPQV DFPVISVSAS LPGASPETMA
SAVATPLERA LGRIAGVSEM TSTSSLGSTR VILVFNLDRD INGAARDVQA AINAAQNLLP
SGMSSRPTYR KVNPSDAPVM ILTLTSDTYS QGQLYDFAST QLSQKISQME GVGDVSIGGS
SLPAVRVALN PVALFNQGIS LDEVRQAIAQ ANVRQPLGNV ENSQKSWQIK TNDELKTADA
YAPLIIHYNN GAAVRLSDVA TVEDSVQNSR NAGMANAKPA ILVMIRRAPD ANIITTVDNI
RAAMPELRAS LPAEIQLDVA QDRSPTIRAS LAEVEQSLVI AVALVILVVF LFLRSGRATA
IPALAVPVSL IGTFAAMYLC GFSLNNLSLM ALTIATGFVV DDAIVVLENI SRHIEAGMKP
LQASLQGVRE VGFTVLSMSL SLVAVFIPLL LMEGLPGRLF REFAVTLSVA IMISLLISLT
LTPMLCARLL RAVPKRSQPR KQGFNRVLLA MQQGYGRSLK WVLNHARWVL LLLLGTIALN
VWLYISIPKT FFPEQDTGRL MGFIQADQSI SFQAMTVKLQ NFMTIVSSDP AVDNVNGFTG
GSRTNSGSMF ISLKPLSERD VSAQQVISRL RIKLAKEPGA NLFLMPVQDI RIGGREANAG
YQYTLLSDDL SELRTWEPKI RAAFSKLPEL ADVNSDQQDK GAEMALTYDR DAMAQLGISV
SAVNALLNNA FGQRQISTIY QPLNQYKVVM EVDDAYTQDV SSLNKMFVIN SEGKPIPLSY
FASWKPINAP LSVNHQGLSA ASTISFNLPE GTDLSSATAA IERTMTSLGV PSAVRGQFSG
TAQAFQQSQS SQLLLILAAI ITVYIVLGVL YESYVHPLTI LSTLPSAGVG ALLALEWFGA
PFSLVALIGI MLLIGIVKKN AIMMVDFALV AQRSGKLSAQ DAIFQACLLR FRPIMMTTLA
ALFGALPLVL TSGDGAELRQ PLGITIVGGL VMSQILTLYT TPVVYLFFDK LRNIRRKAPE
RDVSLS
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