| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2967 |
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| Symbol | |
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| ID | 8133922 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3349019 |
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| End bp | 3352141 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644866250 |
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| Product | multidrug efflux system subunit MdtB |
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| Protein accession | YP_003018526 |
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| Protein GI | 253689336 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGATA CCGTTCCAGC CAGCGGCGGC GGGCCGTCAC GCCTGTTTAT TCTGCGCCCC
GTCGCAACAA CGCTGCTGAT GATCGCCATT CTACTGGCCG GTATCATCGG CTATCGGGCG
CTGCCGGTTT CCGCACTGCC CGAGGTTGAT TACCCAACGA TTCAGGTCAT TACCCTGTAT
CCCGGCGCCA GCCCCGACGT GGTGACGTCG GCGATTACCG CACCGCTGGA GCGGCAGTTC
GGTCAGATGT CCGGGCTAAA ACAGATGTCG ACGCAGAGTG CCGGCGGCGC TTCCGTCATC
ACGCTTCAGT TCCAGCTTGA ACTGTCGCTG GACGTCGCCG AACAGGATGT GCAGGCCGCC
ATCAATGCGG CCAGCAACCT GCTACCGAAC GATCTGCCCT ATCCCCCGAC CTACAGCAAA
GTAAACCCGG CCGATCCGCC GATTATGACG CTGGCCGTCA CCTCCAGCGC CATGTCGATG
ACGCAGGTGC AGGACATGGT GGATAACCGC ATCGCACAGA AAATCTCGCA GGTAGCGGGC
GTCGGTCTGG TGTCGTTAGC CGGTGGGCAG CGTCCTGCCG TGCGGGTAAG GCTGAACGCG
CCAGCGCTGG CGGCATACGG CTTGACCAGT GAAACGATTC GCACTGCGAT TACCGCCGCC
AACGTGAATT CCGCCAAGGG GAGTCTGGAT GGTCCGACGC GTTCGGTCAC GCTCTCCGCC
AACGACCAGA TGAAGACCGT TGATGATTAC CGCAAACTGA TTGTCGCGTG GAAGAATGGC
GCACCGGTGC GGCTTCAGGA TGTCGCCACT ATCGAGCAGG CCGCCGAGAA TATTCATCTT
GGTGCCTGGG CGAATCGCCA GCAGGCGATC ATTATCAACG TTCAGCGCCA GCCGGGTGCC
AACGTCATCA CAACCGCGGA CAGCATTAAC AAGATGCTGC CTGCGTTAAA AGCCAGCTTG
CCGAACGCTG TCGAGGTCAC CACGCTGACT GACCGCACCA CCAGCATTCG CGCCTCGGTG
AAAGACGTCC AGTTCGAGCT GCTGCTGGCT ATCGCGCTGG TCGTGATGGT GATTTACCTG
TTCTTGCGTA ATGCCGTCGC TACGCTGATC CCCAGCATTG CCGTGCCGCT ATCGCTAGTT
GGCACCTTTG CCGCCATGTA TTTCCTCGGT TTTTCCATCA ATAACCTGAC GCTGATGGCG
CTCACCATCG CCACCGGTTT CGTGGTGGAT GATGCTATCG TGGTGATTGA AAACATTGCC
CGCTATATCG AAAAAGGGGA AAAACCGCTT AACGCCGCGC TGAAGGGCGC AGGAGAAATC
GGCTTCACCA TTATTTCTCT GACGTTCTCA CTCATCGCCG TGCTGATCCC GCTGCTGTTT
ATGGGCGATA TCGTCGGACG GCTATTCCGC GAATTTGCCG TCACGCTGGC AGTATCTATC
CTGATTTCCG CCGTCGTGTC GCTCACGCTA ACGCCGATGA TGTGCGCCCG CATGCTGAGT
CATCAGTCTC TGCGGAAACA GAACCGTTTT ACCCGTGCCA GCGAACGTTT CTTCACTCGC
CTGATTGATG CCTACGGCGT CTGGCTACGC AAGGTACTGA ACCATCCGTG GCTGACGCTT
AGCGTCGCGC TCGGTACGCT GCTGCTGACG ATTCTGCTCT ATATCTGGAT CCCGAAAGGC
TTCTTCCCGA TACAGGATAA CGGCATTATT CAGGGCACCG TGCAGGCGCC GCAAACCGTC
TCGTTCAGCA ATATGGCCGA CCGCCAGCAG CGCGTTGCGT CCATCATCAT GAAAGATCCT
GCGGTGGAAA GCGTCTCCTC GTTCATCGGC GTTGACGGCA CCAATGCCGC ATTGAATAGT
GGCAGGCTGC AAATCAACCT GAAACCGCTC AGTGAACGCA GCGAACGCAT TCCAGAGATC
ATCAGCCGCC TGCAACAGCA GACCGCACAG ATTCCCGGCA TCCAGCTGTA TCTGCAACCG
GTGCAGGATC TCACTATCGA TACTCAGATT AGCCGCACGC AGTACCAGTT TACGCTACAG
GCGATGTCGC TGGATGAACT CAGCGCCTGG GTGCCGAAAC TGATGACCGA ACTGAAAAAA
CTGCCGCAGT TGGAGGATGT CAGCAGCGAC TGGCAAGACG GCGCCGCCGT CGCCTACGTC
AACGTGAATC GCGACAGCGC CAGCCGTCTG GGCATCACGA TGTCGCAGGT CGACAGCGCG
TTGTACAACG CTTTTGGTCA GCGTCTGGTG TCCACCATCT ATACGCAGGC CAGCCAGTAC
CGCGTCGTGC TGGAGCACGA TACAACGAAC AACACCGGTC TGGACGCGCT GAACGACGTG
CGTCTCATCA GCAGCGACGG CGGCACCATT CCGCTCAGCA GTATTGCCAC CATTGAAGAG
CGTCAGGGGC CGTTGGCAAT CAACCATATT GACCAGTTCC CATCGACGAC GATCTCCTTC
AACGTCGCCA ATGGTTATGC ACTAGGTGAA GCAGTGGATG CCATCACGCA GGCCGAACAG
CAGATGAACC TGCCTGCGGA TATCACCACT CGTTTTCAGG GCAGTACGCT GGCGTTCCAG
TCGGCGCTGA GCAGCACCGT ATGGCTTATC GTGGCGGCGA TTGTCGCAAT GTACATTGTG
CTCGGCGTGC TGTACGAAAG CTTTATTCAC CCGATCACCA TCTTGTCCAC GCTGCCAACA
GCGGGCGTCG GTGCGCTGTT GGCGCTGATG ATGGCGGGGA ATGAACTGGA TGTGATCGCT
ATTATCGGAA TCATTTTGCT CATCGGGATC GTGAAGAAGA ACGCCATCAT GATGATCGAC
TTCGCGCTGG CGGCGGAGCG AGAACAGGGC ATGAAACCGT ATGACGCGAT TTATCAGGCC
TGCCTGCTGC GCTTCCGGCC GATTCTGATG ACGACCATGG CGGCGTTGCT AAGTGCGCTA
CCGCTCATGC TGAGTACTGG CGTCGGCGCG GAACTGCGCC AGCCGCTGGG GATCTGTATG
GTCGGCGGCC TGATCATGAG CCAGATTCTG ACGCTGTTTA CCACACCGGT GATTTACCTG
CTGTTTGACC GTCTGGCGAC GCGTTTCCGT CGTGCGCCGC GTCAGGAGGA AGAAACCGAG
TGA
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| Protein sequence | MQDTVPASGG GPSRLFILRP VATTLLMIAI LLAGIIGYRA LPVSALPEVD YPTIQVITLY
PGASPDVVTS AITAPLERQF GQMSGLKQMS TQSAGGASVI TLQFQLELSL DVAEQDVQAA
INAASNLLPN DLPYPPTYSK VNPADPPIMT LAVTSSAMSM TQVQDMVDNR IAQKISQVAG
VGLVSLAGGQ RPAVRVRLNA PALAAYGLTS ETIRTAITAA NVNSAKGSLD GPTRSVTLSA
NDQMKTVDDY RKLIVAWKNG APVRLQDVAT IEQAAENIHL GAWANRQQAI IINVQRQPGA
NVITTADSIN KMLPALKASL PNAVEVTTLT DRTTSIRASV KDVQFELLLA IALVVMVIYL
FLRNAVATLI PSIAVPLSLV GTFAAMYFLG FSINNLTLMA LTIATGFVVD DAIVVIENIA
RYIEKGEKPL NAALKGAGEI GFTIISLTFS LIAVLIPLLF MGDIVGRLFR EFAVTLAVSI
LISAVVSLTL TPMMCARMLS HQSLRKQNRF TRASERFFTR LIDAYGVWLR KVLNHPWLTL
SVALGTLLLT ILLYIWIPKG FFPIQDNGII QGTVQAPQTV SFSNMADRQQ RVASIIMKDP
AVESVSSFIG VDGTNAALNS GRLQINLKPL SERSERIPEI ISRLQQQTAQ IPGIQLYLQP
VQDLTIDTQI SRTQYQFTLQ AMSLDELSAW VPKLMTELKK LPQLEDVSSD WQDGAAVAYV
NVNRDSASRL GITMSQVDSA LYNAFGQRLV STIYTQASQY RVVLEHDTTN NTGLDALNDV
RLISSDGGTI PLSSIATIEE RQGPLAINHI DQFPSTTISF NVANGYALGE AVDAITQAEQ
QMNLPADITT RFQGSTLAFQ SALSSTVWLI VAAIVAMYIV LGVLYESFIH PITILSTLPT
AGVGALLALM MAGNELDVIA IIGIILLIGI VKKNAIMMID FALAAEREQG MKPYDAIYQA
CLLRFRPILM TTMAALLSAL PLMLSTGVGA ELRQPLGICM VGGLIMSQIL TLFTTPVIYL
LFDRLATRFR RAPRQEEETE
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