| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2965 |
|---|
| Symbol | |
|---|
| ID | 8133920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3346333 |
|---|
| End bp | 3347529 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644866248 |
|---|
| Product | nucleoside transporter |
|---|
| Protein accession | YP_003018524 |
|---|
| Protein GI | 253689334 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1972] Nucleoside permease |
|---|
| TIGRFAM ID | [TIGR00804] nucleoside transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTGT CCCATATCGC GCAATTTATT CTGGCGCTGG TTGTTGTTAC GGCGCTGGCG
CTGCTTGTCT GCCGCGATCG TAAAAGCATT CGTATTCGTT TTATTATTCA GCTACTCGTC
ATCGAAATTC TGCTTGCTTA CTTCTTCCTG TACTCAAACG TTGGGTTAGG TGTCGTTAAG
GGGTTCGCGG CGGTATTCGA CAAATTACTC GGATTTGCAG GCCAAGGGAC GGACTTCGTA
TTCGGTGACA TGGTGAATAG TGAGAAGAAC CTGATTTCCT TCTTCTTCAA AGTGCTCTGC
CCTATCGTCT TCATTTCCGC GCTGATCGGT ATCCTGCAAC ACATTAGAGT GCTGCCGATC
ATCATCCGCG CGATTGGTAC ACTCCTGTCC AAAGTGAACG GCATGGGCAA ACTGGAATCC
TTTAACGCGG TCAGTTCACT GATTCTCGGC CAGTCCGAAA ACTTCATTGC CTACAAAGAT
ATTCTGGGCA AGATGTCTGA AAAACGCATG TACACCATGT CCGCGACCGC CATGTCGACC
GTATCGATGT CTATTGTCGG TGCGTACATG TCGATGCTGG ATGCCAAATT CGTCGTTGCT
GCGCTGATTC TGAACATGTT CAGTACCTTC ATCGTGCTGT CGCTGATTAA CCCTTACAAA
GTTGGTGAAG AGCCGGAATT GCAGTTGGGT AATCTGCATG AAAATCAGAG CTTCTTTGAA
ATGCTGGGCG AATACATTCT GGCGGGCTTT AAAGTCGCCG TTATCGTTGC AGCCATGCTG
ATCGGCTTCA TTGCACTGAT TGCCGCGGTC AACGCGATTT TCAGCGCCAT TTTTGGCATC
AGCTTCCAGG AAGTCCTTGG CTACGCGTTC TACCCGTTCG CCTGGATCAT GGGTATCCCA
TCTAACGAAG CTCTGCAGGT GGGTAGCATC ATGGCGACCA AACTGGTTTC TAACGAGTTT
GTCGCGATGC TGGAACTGCA AAAAGTGGCA GGCGAACTGT CTCCACGCAG CGTGGGCATT
CTGTCCGTGT TCCTGGTGTC CTTCGCCAAC TTCTCATCCA TCGGGATTAT TGCCGGTGCG
ATTAAAGGCC TGAACGAGCA ACAGGGCAAC GTGGTTTCCC GTTTCGGTCT GAAACTGGTT
TACGGTTCCA CGCTGGTGAG CATCCTTTCC GCCGCTATCG CGGGTCTGGT GCTGTAA
|
|---|
| Protein sequence | MSLSHIAQFI LALVVVTALA LLVCRDRKSI RIRFIIQLLV IEILLAYFFL YSNVGLGVVK
GFAAVFDKLL GFAGQGTDFV FGDMVNSEKN LISFFFKVLC PIVFISALIG ILQHIRVLPI
IIRAIGTLLS KVNGMGKLES FNAVSSLILG QSENFIAYKD ILGKMSEKRM YTMSATAMST
VSMSIVGAYM SMLDAKFVVA ALILNMFSTF IVLSLINPYK VGEEPELQLG NLHENQSFFE
MLGEYILAGF KVAVIVAAML IGFIALIAAV NAIFSAIFGI SFQEVLGYAF YPFAWIMGIP
SNEALQVGSI MATKLVSNEF VAMLELQKVA GELSPRSVGI LSVFLVSFAN FSSIGIIAGA
IKGLNEQQGN VVSRFGLKLV YGSTLVSILS AAIAGLVL
|
|---|
| |