| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2961 |
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| Symbol | |
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| ID | 8133916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3340971 |
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| End bp | 3342188 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644866244 |
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| Product | Arabinogalactan endo-1,4-beta-galactosidase |
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| Protein accession | YP_003018520 |
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| Protein GI | 253689330 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3867] Arabinogalactan endo-1,4-beta-galactosidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00892323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATGA AAAAACGCGT ACTGATGGCC GCCATGCTGG CAACTGGCCT GTTGACCTTC
TCCCTGCCGC AAACCCTGTA TGCCGCAGAG AATGTGACGA TCAATAAGTT GACGAACGTC
CCTGCCGACT TCATTAAAGG CGCGGATATT TCCATGCTGA ATGAGGTGGA AAAGCACGGC
GGAAAATTTT ATGACGAGAA TGGCAAACAG AAAGACGCCA TGCTGATTCT GAAAGAGAAT
GGGATTAACT ATATTCGCCT GCGCATCTGG AACGATCCGA AAGATGCAGC GGGCAACGCC
TACGGCGGCG GTAACAACGA TCTGGCCACC ACGCTGGCGC TGGCTAAACG CGCCAAAGCG
AACGGCATGA AAGTGCTGCT GGATTTCCAC TACAGCGATT TCTGGACCGA TCCGGCTCAC
CAAAACAAGC CTAAAGCCTG GTCTGGCCTA GACATGGCAA AGCTCACCAC GGCCGTACAT
GATTTCACTA AAGCCACGAT TAGCGAATTC CAGAAAGCGG GCATCATGCC GGATATGGTG
CAAATCGGTA ACGAACTGAA CGGCGGCATG CTGTGGCCGG AAGGAAAAAG CTGGGGCCAG
GGTGGCGGCG AGTTTGATCG CCTCGCGGCG CTGCTGAAAG CCGGTATTCA GGGTGTTAAG
GACGTACAAG GTTCGAATAA CGTCAAAATC ATGCTGCATC TGGCAGAAGG CACCAAAAAC
GACACCTTTA TCTGGTGGTT CGATGAAATC GTCAAACGCA ATGTTCCGTT CGATGTTATC
GGTGCCTCGT TCTACACCTA CTGGAACGGC CCCATCAGCG CGTTGCAGTA CAACATGAAC
GACGTGACCA AACGCTACAA TAAAGACATC ATCGTGGTCG AAGCCGCCTA TGCCTATACG
CTGGAAAACT GCGATAACGC GGAAAACAGC TTCCAGCAAA AAGAGCTGGA TGCAGGCGGC
TATCCGGCCT CCGTTCAGGG TCAGGCCAAC TACCTGCACG ATCTGATGCA AAGCATCATC
AACGTCCCCA ATCAGCGCGG CAAAGGCATC TTCTATTGGG AGCCCATCTG GCTGCCTACC
CCCGGCGCAA CCTGGGCCAC GAAAGCAGGT ATGAAATACA ACAATGACGA ATGGAAGGAA
GGCAACGCAC GAGAAAATCA GGCGCTGTTC GACTGCAAAG GCAACGTCCT GCCTTCTATC
AAAGCTTTTA AGCCGTAA
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| Protein sequence | MKMKKRVLMA AMLATGLLTF SLPQTLYAAE NVTINKLTNV PADFIKGADI SMLNEVEKHG
GKFYDENGKQ KDAMLILKEN GINYIRLRIW NDPKDAAGNA YGGGNNDLAT TLALAKRAKA
NGMKVLLDFH YSDFWTDPAH QNKPKAWSGL DMAKLTTAVH DFTKATISEF QKAGIMPDMV
QIGNELNGGM LWPEGKSWGQ GGGEFDRLAA LLKAGIQGVK DVQGSNNVKI MLHLAEGTKN
DTFIWWFDEI VKRNVPFDVI GASFYTYWNG PISALQYNMN DVTKRYNKDI IVVEAAYAYT
LENCDNAENS FQQKELDAGG YPASVQGQAN YLHDLMQSII NVPNQRGKGI FYWEPIWLPT
PGATWATKAG MKYNNDEWKE GNARENQALF DCKGNVLPSI KAFKP
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