Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2958 |
Symbol | |
ID | 8133913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3337435 |
End bp | 3338667 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644866241 |
Product | extracellular solute-binding protein family 1 |
Protein accession | YP_003018517 |
Protein GI | 253689327 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2182] Maltose-binding periplasmic proteins/domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.347864 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATGA AAACACTGAC CACCGTCATT ATGATTTCAC TGGGTATCAC CGGCGTACTC AGCAAATCAG CGCTGGCGGC CGACAAAGAG CTTCTGGTAT GGGAAGATAT CAAGAAATCT GACGGCATCG CCGATGCGAT CAAAGCCTTT GAAAAACAAA ATAATGTCAA AATCAAAGTG CTGGAAACAC CTTACGCTCA GCAAATTGAG AAACTCCGTC TGGACGGCCC GGCAGGTATC GGCCCGGATG TGATTGTGAT GCCACACGAT CAGGTTGGCA CCGCCGTGGT TCAAGGATTG ATTAGCGAAC TGAAACTGGA TCAGACGTTC CTGTCGAGTT TCACCAAACC CGCACTGGAA GCGCAAACCT ATAACGGTAA GCTGTATGGC GTGCCAAAAG CCGTTGAAAC CACCGTGCTG GTGTACAACA AAGACCTGAT GCCACAGCCG CCGGAAAAAT TCGACGATCT GTTTACCTTC TCCAAGCAGC AACGAGCCGA AGGTCGCTAC GGTCTGCTGG CAAAATTTGA CGAGATTTAT TACGCCTATG GCGTCATCGC AGGGATGGGT GGCTACATTT TCGGCCAGAA CAGCAACGGT TCACCGAATG TCAAAGACAT CGGTCTGGAT AAACAAGCCA CCATCAATGC CGTGAACTAC ATCAAGAAAT TCTACGCTGA TGGCCTGTTC CCACCGGGCA TCGTCGGCGA AACCGGCGCT AACGCCATCG ACTCCCTGTT TACCGAGAAA AAAGCCGCAG CGGTGATTAC CGGCCCGTGG GCATTCCAAC CCTACAAGAA CGCTGGCGTA AATTACGGCG TGGCGCCACT GCCGCTGCTG CCAAACGGCG AGCATCCACG TTCACTGCTG GGTGTGAAAG GCTACAGCAT TTCCACCTAC TCCAAAAACA AAGAGCTGGC ACAAAAATTC ATTGAGTTCA TCAATCAGCC GGAATACGCC AAAGTTCGCT TCCAGTTGAC CGGTGAAATC CCACCGATCG CCGCACTGGT TGACGATCCG CTGATTAAAG ATGATGAAAA ATCCCGTGCT GTTGCAATCC AGTCTGGTTA TGCCGTCCCT ATGCCAAGCG TACCGGAAAT GCAGGAAGTC TGGACGCCAG CCAACAGCGC GTTGCAACTG AGCGTGACGG GCAAACAGGA CACCAAAGCG GCGCTGGAAT CCGCCGTGAA AGTCATAAAA ATGCAGATCG AAGCCAACCA CAGTAACCAG TAA
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Protein sequence | MKMKTLTTVI MISLGITGVL SKSALAADKE LLVWEDIKKS DGIADAIKAF EKQNNVKIKV LETPYAQQIE KLRLDGPAGI GPDVIVMPHD QVGTAVVQGL ISELKLDQTF LSSFTKPALE AQTYNGKLYG VPKAVETTVL VYNKDLMPQP PEKFDDLFTF SKQQRAEGRY GLLAKFDEIY YAYGVIAGMG GYIFGQNSNG SPNVKDIGLD KQATINAVNY IKKFYADGLF PPGIVGETGA NAIDSLFTEK KAAAVITGPW AFQPYKNAGV NYGVAPLPLL PNGEHPRSLL GVKGYSISTY SKNKELAQKF IEFINQPEYA KVRFQLTGEI PPIAALVDDP LIKDDEKSRA VAIQSGYAVP MPSVPEMQEV WTPANSALQL SVTGKQDTKA ALESAVKVIK MQIEANHSNQ
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