| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2930 |
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| Symbol | |
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| ID | 8133885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 3305000 |
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| End bp | 3306547 |
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| Gene Length | 1548 bp |
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| Protein Length | 515 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644866213 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_003018489 |
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| Protein GI | 253689299 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.827018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGTCA GCACGCGTGA CAAGGCCAGC CACTATCAAA TGCCGCTCCA AAAATTGATG
ATTATTTTTA TGCTATTCAT CATCACCACG GTAGTGGCGC TGAACGGATG GGCAGTATTC
AACTCTCACC AACAGCTTAT CGATTCCATA GAGCGAAACG CCAAAAACCT GTCATTGTCA
CTGGCACGCC ATGCCGAAGA TACATTTTTA CAAGTCGACA TATTGTTACA GGATTTACAA
GAGCGTATCG AGCAGGATGG TCAATCGCCC GCACAGCTGA ACCGATTGGG CGATATTCTA
AAAAATCGTA AAGCGACGCT GCCGCAGTTG CATGGCATCT TCATTTACGA CGACAAAGGC
GAGTGGCTGG TGAACTCAGG GATAGCAAAA CCAGCAAATG CGAATAACGC CGACAGAGAA
TATTTCAAGT ACCACCAGAG CAACGTCAGC CAGACCATGC ACATCGGCAG CGTGATTCAG
AGCCGCTCTA CGGGCGATTT GATCATTCCC GTCTCTATGC GCATCAATAA GCCAGACGGC
AGCTTTAACG GCGTGCTACT TGCCACCCTC TCACTGAACT ATTTCAAACA GTATTATGGG
TACTACTCCA TGGGGAACAT GGATGTGCTC GCTATCTTGC TGTCCGATGG CAGGATTCTG
TACGGTCGGC CTTACGACGA TTCATACATC AACCGTAATG TATCCAACGG TCCGCTCTTT
TCAGAACATC TGAAACAGTC CGAGAGTGGT ACAGCGACAT TCGTCTCCAC GCTGGATCAC
ATCGAACGGA TTTATGGCTA CACCAAATTA AAGCGCTACC CTATCGTTAT CGCAGCAGGC
TACGACCTCA ATTTAGTGCT CGCAAAATGG AGAACAGATA GTCTGGTTTA TGGTGCCATT
ACGCTCATCC TGCTGTTCAC CATTATCCTG CTCGGCCTGA TCGTGCTGAG ACAAATTCGC
ATCAATTTGA AAAATCAGGT CGATTTAACC ATCGTGCGCG ATGAACTCAC CTCAGTTAAC
CATACCCTGC AAACGCTGGC GCTGTTTGAT GGCCTAACGG GCTTAGCCAA CCGTCGTCAA
TTCGACATGT TTCTACAGCA AACGCTATTG CGAGCGGCGG AAACGCGGGA ATGTATGGCA
CTCATCATGA TCGATGTCGA CGCCTTCAAG AAATACAACG ATCACTATGG GCATGTGGCT
GGCGATGAGT GCCTGCGTAA GATTGGTAAT ATCCTGAGCA ACATGCCGAG GCGCAAAGAG
GATTTGGTCG CCCGCTATGG CGGCGAGGAG TTCGCTATCA TCATCACCGA CACCGATAAG
CACGGTGCCA CCACGCTTGC TCAGCGAGCA CTGGATTTAG TGCGCGAAGA AAAAATTTCA
CATGAAACGA CGCTGTTCCT GGAAAAAATC GTCACCATCA GCGCGGGTGT CTACGTGTTC
TGCGTGGATA CTCCGCCGCC AACCGCGTCG TCCGTCATCG ATATCGCCGA TGCCGCGCTG
TATCGCGCCA AAAATGGCGG CAAAAACCGT ATCGAGGTGA GCGAATAG
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| Protein sequence | MKVSTRDKAS HYQMPLQKLM IIFMLFIITT VVALNGWAVF NSHQQLIDSI ERNAKNLSLS
LARHAEDTFL QVDILLQDLQ ERIEQDGQSP AQLNRLGDIL KNRKATLPQL HGIFIYDDKG
EWLVNSGIAK PANANNADRE YFKYHQSNVS QTMHIGSVIQ SRSTGDLIIP VSMRINKPDG
SFNGVLLATL SLNYFKQYYG YYSMGNMDVL AILLSDGRIL YGRPYDDSYI NRNVSNGPLF
SEHLKQSESG TATFVSTLDH IERIYGYTKL KRYPIVIAAG YDLNLVLAKW RTDSLVYGAI
TLILLFTIIL LGLIVLRQIR INLKNQVDLT IVRDELTSVN HTLQTLALFD GLTGLANRRQ
FDMFLQQTLL RAAETRECMA LIMIDVDAFK KYNDHYGHVA GDECLRKIGN ILSNMPRRKE
DLVARYGGEE FAIIITDTDK HGATTLAQRA LDLVREEKIS HETTLFLEKI VTISAGVYVF
CVDTPPPTAS SVIDIADAAL YRAKNGGKNR IEVSE
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