Gene PC1_2867 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2867 
Symbol 
ID8133821 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp3242791 
End bp3243771 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content55% 
IMG OID644866155 
ProductMandelate racemase/muconate lactonizing protein 
Protein accessionYP_003018432 
Protein GI253689242 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.263413 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGAGA TGCAATGTTT CACCGAGAGT TGGCCAATAG AGGGCGCATT TACCATCTCA 
CGCGGCAGTA AACGCCAGGC GGATGTCGTT GTGGTTGCGC TTCAGTCCGG CAAGGTAGCA 
GGCTACGGAG AATGTGTCCC TTATTCACGC TACGGCGAAT CCCTCGACAG CGTAATGGCG 
CAAATTGCCT CATTGCACAG CGATTTTCGT AACGGTTTAG ATCGGGAGAC GCTGCAAAAC 
ATTCTGCCCG CAGGCGCGGC GCGCAATGCG CTTGATTGCG CATTCTGGGA TCTGGAATGC 
AAACAGCACC AGCAGCGCAT TTGGCAACGT TTGAATCTCC CTTCGCCTAT GCCGCTGGAG 
ACCGCCTATA CGCTATCGCT AGATACACCC GATCGTATGC GGCACGCCGC AATACACAAT 
GCCCATCGTC CCCTTCTCAA ATTAAAACTG GCGGATGCAA ACGATCTGGC CAGAGTCGCC 
GCAGTTCGAG AGGGCGCTCC CTTGGCTCGC CTAATTGTGG ACGCCAATGA AGGATGGGAC 
GCTGAACGCT ATCTGATGCT GGTGCCTGAA CTCGCCGCAC TTGGCGTCAC GATGATCGAA 
CAACCTTTCC CGGCGGGCAA AGATGATGTG TTGGCAGATC TGCCCCGCCC GATTCCCGTC 
TGTGCCGATG AATCCTGTCA TGACAGCCAA TCGCTGGCCG CTCTGACCGG GCGCTATGAC 
ATGATCAACA TCAAGCTGGA TAAAACTGGC GGTCTAACGG AAGCCCTGCG TTTACGCCAC 
TCCGCGCAGG AGGAAGGCTT AAAAATTATG GTCGGCTGCA TGGTAAGCAC ATCGCTCTCG 
ATGGCACCCG CATTTGTCGT CGCACAAGGT GCCGCCGTAG TTGATTTGGA CGGTCCGCTG 
CTCTTGCAGC GCGATCGCAA TAACGGGTTG CACTATAACG GTAGCGAAAT ATTACCGCCC 
AACGCATTAT TGTGGGGATA A
 
Protein sequence
MTEMQCFTES WPIEGAFTIS RGSKRQADVV VVALQSGKVA GYGECVPYSR YGESLDSVMA 
QIASLHSDFR NGLDRETLQN ILPAGAARNA LDCAFWDLEC KQHQQRIWQR LNLPSPMPLE 
TAYTLSLDTP DRMRHAAIHN AHRPLLKLKL ADANDLARVA AVREGAPLAR LIVDANEGWD 
AERYLMLVPE LAALGVTMIE QPFPAGKDDV LADLPRPIPV CADESCHDSQ SLAALTGRYD 
MINIKLDKTG GLTEALRLRH SAQEEGLKIM VGCMVSTSLS MAPAFVVAQG AAVVDLDGPL 
LLQRDRNNGL HYNGSEILPP NALLWG