Gene PC1_2860 details

Gene Information

• Locus tag: PC1_2860
• ID: 8133814
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 3232957
• End bp: 3234879
• Gene Length: 1923 bp
• Protein Length: 640 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644866148
• Product: general secretion pathway protein D
• Protein accession: YP_003018425
• Protein GI: 253689235
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02517] general secretion pathway protein D

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGTCAT CATTGGCGTG GAGCGCCGAA TTCTCCGCCA GTTTTAAGGG CACGGATATT 
CAGGAGTTTA TCAATACCGT CAGTAAGAAT TTGAATAAGA CGGTCATTAT CGATCCGTCG 
GTCAGCGGAA CGATCACCGT ACGCAGCTAT GACATGATGA ACGAAGAACA GTATTACCAG 
TTCTTCCTGA GCGTGCTGGA TGTCTATGGA TTTACCGTTA TTCCGATGGA TAACAACGTC 
CTGAAAATCA TTCGCTCGAA GGATGCGAAA TCGACGTCTA TGCCGCTGGC GACTGACGAT 
CAGCCGGGCA TTGGCGATGA AGTGGTGACG CGCGTCGTGC CAGTGAACAA TGTCGCTGCC 
CGCGATCTGG CGCCGCTGCT GCGCCAGTTG AACGATAACG CTGGCGCCGG GAGCGTGGTG 
CATTACGAAC CGTCGAACGT GCTGCTGATG ACCGGCCGCG CGGGGGTGAT CAAACGGTTG 
ATGACGATTG TCGAACGGGT TGATCAGACG GGCGATCGGA ATGTGACCAG CATACCGCTG 
TCTTACGCTT CCTCGACGGA AGTGGTGAAA ATGGTGAATG AGCTGAACAA GATGGATGAA 
AAATCCGCCT TGCCCGGCAT GTTGACCGCT AACGTGGTGG CTGACGAACG AACCAACTCG 
GTGCTGGTGC GCGGAGAACC AAACTCACGC CAGCGCGTTA TCGACATGAT CAAACAGCTC 
GATCGCCAGC AGGCGGTACA GGGCAACACC AAAGTTATCT ACCTTAAGTA CGCGAAAGCG 
GCCGATCTGG TCGAAGTGCT CACTGGCGTC GGCGACAGTA TTCAAACCGA CCAGCAAAAT 
GCGCTGCCTG CGCTGCGCAA AGACATTTCG ATTAAGGCCC ACGAACAAAC TAACTCACTG 
ATTGTGAATG CGGCACCTGA CATCATGCGC GACCTGGAAC AGGTGATTGC ACAGTTGGAT 
ATCCGCCGTC CGCAGGTACT GGTCGAAGCG ATTATCGCGG AAGTACAGGA TGCCGATGGA 
ATGAATCTGG GCGTTCAATG GGCGAATAAA AATGCCGGGG TAACGCAATT CACCAATACG 
GGATTGCCGA TTACGACAAT GATGGCAGGA GCGGACCAAT TTCGACGTGA TGGAACGCTT 
GGCACGGCAG CGACAACGGC ACTTGGCGGT TTCAACGGGA TTGCCGCCGG TTTCTATCAG 
GGTAACTGGG GCATGCTGAT GACGGCGCTG TCCAGCAACA GCAAGAACGA TATTCTGGCA 
ACGCCCAGTA TCGTGACGCT GGATAATATG GAAGCGACGT TTAACGTTGG GCAGGAAGTA 
CCTGTATTGG CAGGTTCGCA GACGACATCC GGCGACAACG TTTTCCAAAC GGTGGAACGT 
AAAACGGTCG GTATCAAACT GAAGGTGAAA CCCCAAATCA ACGAAGGCGA CTCCGTTCTG 
TTGGAAATCG AACAGGAAGT CTCCAGCGTA GCTGATGCCG CCTCCAGCAG CAGCACCAAC 
CTTGGCGCAA CATTCAATAC GCGTACCGTT AATAACGCGG TGCTGGTCAG CAGCGGCGAA 
ACCGTGGTGG TGGGCGGCTT GCTGGATAAA AGTACGAATG AGTCTGCAAG CAAAGTGCCC 
CTATTGGGCG ATATTCCCGT TCTGGGATAC TTGTTCCGCT CCAACAGTCA GGAAACGAAA 
AAGCGTAACC TGATGCTGTT TATCCGACCT TCCATTATTC GCGATCGCAG TCAGTACCAG 
AGTGCCTCTG CCAGTAAGTA TCATTCGTTC AATGCTGAAG AAGAGAAGCA GCGAGAGGCG 
AATGGCGGGA AGGCTAATCT GCTGGATAAC GATTTACTGC GCTTGCCGGA AGGCGGGAAC 
GCCTATACGT TCCGTCAGGT TCAGTCCTCT ATTGTGGCGT TTTATCCGGC GGGCGGGAAA 
TGA 

 

Protein sequence

MASSLAWSAE FSASFKGTDI QEFINTVSKN LNKTVIIDPS VSGTITVRSY DMMNEEQYYQ 
FFLSVLDVYG FTVIPMDNNV LKIIRSKDAK STSMPLATDD QPGIGDEVVT RVVPVNNVAA 
RDLAPLLRQL NDNAGAGSVV HYEPSNVLLM TGRAGVIKRL MTIVERVDQT GDRNVTSIPL 
SYASSTEVVK MVNELNKMDE KSALPGMLTA NVVADERTNS VLVRGEPNSR QRVIDMIKQL 
DRQQAVQGNT KVIYLKYAKA ADLVEVLTGV GDSIQTDQQN ALPALRKDIS IKAHEQTNSL 
IVNAAPDIMR DLEQVIAQLD IRRPQVLVEA IIAEVQDADG MNLGVQWANK NAGVTQFTNT 
GLPITTMMAG ADQFRRDGTL GTAATTALGG FNGIAAGFYQ GNWGMLMTAL SSNSKNDILA 
TPSIVTLDNM EATFNVGQEV PVLAGSQTTS GDNVFQTVER KTVGIKLKVK PQINEGDSVL 
LEIEQEVSSV ADAASSSSTN LGATFNTRTV NNAVLVSSGE TVVVGGLLDK STNESASKVP 
LLGDIPVLGY LFRSNSQETK KRNLMLFIRP SIIRDRSQYQ SASASKYHSF NAEEEKQREA 
NGGKANLLDN DLLRLPEGGN AYTFRQVQSS IVAFYPAGGK