| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2859 |
|---|
| Symbol | |
|---|
| ID | 8133813 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3231464 |
|---|
| End bp | 3232960 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644866147 |
|---|
| Product | general secretory pathway protein E |
|---|
| Protein accession | YP_003018424 |
|---|
| Protein GI | 253689234 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGACG TTGCCTCCCA GATTATAGAA TTACGCCCCA TACTGCCTTT TGCCTATGCT
CGGTCGCAGC AAATTTTGCT GTTGCAGCGG GAAAATGATA CCAGTCTGCG GACGATCTGT
GTCGCGCAAA CGCCGCCAGC CGCCTTGCTG GAAGCACGTC GGATTGCAGG CTGTTCGCTT
AAGATTGAAC GGGTTACGGA AGACGAATTT GAGCGGCAAT TAGTTATCAG CTATCAGCGT
GATTCGGAAG AAGCCCGTCG TCTGATGGAA GACATCGGCA ATGAGATGGA TTTCTATACG
CTGGTGGAAG AGCTACCGGA TAGCGATGAT TTGCTTGATG CCGATGATGA TGCGCCGATT
ATCCGCCTGA TCAATGCGAT GCTGACCGAA GCAATTAAGG ATAAGGCGTC GGATATTCAT
ATCGAAACGT ATGAGCGCTA TTTGTTGATC CGTTTCCGTG TCGACGGTGT GCTGCGTGAA
ATCCTGCGTC CACAGCGTAA GCTGGCGTCG CTGCTGGTAT CGCGTATCAA GGTCATGGCC
AAGCTGGATA TTGCGGAAAA ACGTATCCCG CAGGATGGGC GCATGGCGCT GCGGGTGGGA
GGACGAGCGA TTGACGTTCG TGTCTCCACG CTGCCGTCGA ACTATGGTGA ACGCGTTGTG
CTGCGTTTGC TGGATAAAAA CAGCGTGAAG CTCGATCTTG AACTGCTGGG CATGTCGGAG
CGCAACCGGC AGCAACTGGA CAGCCTGATC CATCGTCCAC ATGGCATTAT TCTTGTCACC
GGTCCGACAG GGTCGGGGAA AAGTACCACG CTGTACGCTG CGCTCAGCCG CTTGAATGCC
TCGGAACGTA ACATCATGAC GGTGGAAGAT CCCATTGAGT ATGAGCTGGA AGGCATTGGG
CAAACCCAGG TCAATACCAA GGTGGATATG ACGTTTGCCC GCGGACTGCG TGCCATTCTG
CGTCAGGACC CAGACGTTGT GCTGGTAGGG GAAATTCGTG ATGGTGAAAC GGCGCAGATT
GCCGTACAGG CATCGCTGAC CGGTCACCTT GTGTTATCCA CACTGCATAC CAATAGCGCG
CTGGGCGCGC TGTCTCGTTT ACAGGATATG GGCGTCGAGC CTTTCCTGCT GTCAACCTCT
TTGCTGGGTG TGCTTGCACA GCGTCTTGTC AGAACACTGT GTTCTGAGTG TAGCCAGCCG
CATCCGGTTG ATCCGGTTCA GGCCGAACAA ATGGGGATCG CACCGGGTAC GCTGCTGCAT
AACCCGGTGG GTTGCCCGCA GTGTAGCTAT ACCGGCTATC GGGGACGTAT CGGCATTCAT
GAACTGGTAC TGATCAATGA CGACGTTCGC GCCGCGATCC ACCGCAGCGA CGGTGAAATG
GCGATTGCGC AGATTCTGGG CACAAGTCGA ACGACAATTC GTCAGGACGG GCTGGAAAAG
GTACTGGCGG GGTTCACGAC CTGGGAAGAA GTGATCCGCG TAACCAAAGA GGAATGA
|
|---|
| Protein sequence | MSDVASQIIE LRPILPFAYA RSQQILLLQR ENDTSLRTIC VAQTPPAALL EARRIAGCSL
KIERVTEDEF ERQLVISYQR DSEEARRLME DIGNEMDFYT LVEELPDSDD LLDADDDAPI
IRLINAMLTE AIKDKASDIH IETYERYLLI RFRVDGVLRE ILRPQRKLAS LLVSRIKVMA
KLDIAEKRIP QDGRMALRVG GRAIDVRVST LPSNYGERVV LRLLDKNSVK LDLELLGMSE
RNRQQLDSLI HRPHGIILVT GPTGSGKSTT LYAALSRLNA SERNIMTVED PIEYELEGIG
QTQVNTKVDM TFARGLRAIL RQDPDVVLVG EIRDGETAQI AVQASLTGHL VLSTLHTNSA
LGALSRLQDM GVEPFLLSTS LLGVLAQRLV RTLCSECSQP HPVDPVQAEQ MGIAPGTLLH
NPVGCPQCSY TGYRGRIGIH ELVLINDDVR AAIHRSDGEM AIAQILGTSR TTIRQDGLEK
VLAGFTTWEE VIRVTKEE
|
|---|
| |