Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2858 |
Symbol | |
ID | 8133812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3230236 |
End bp | 3231462 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644866146 |
Product | general secretion pathway protein F |
Protein accession | YP_003018423 |
Protein GI | 253689233 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACAGT ACCACTATCA GGCGCTGGAT GCGCAAGGGA AAAAATGCCG TGGCACTCAG GAAGCGGACT CTGCCAGACA GGCGCGTCAG CTATTGCGGG AGCGCGGACT GGTGCCGCTG TCGGTTGATG AAGGTCGCGG TGACCAGCAG AAAGCCGGTT CTACGGGGTT TTCCCTACGC CGCAAAATTC GTATCAGTAC CTCAGATTTG GCTCTGTTGA CTCGCCAGTT GGCGACGCTG GTGGCGGCGT CATTGCCGCT GGAAGAAGCG CTGGATGCGG TGGCGAAACA GAGCGAAAAG CCGCATCTGA GCCAGTTGAT GGCGGCAGTG CGCAGCAAGG TTATGGAAGG GCATTCGCTG GCCGATGCGA TGAAATGTTT TCCCAGCAGC TTTGAGCGAC TGTATTGCGC GATGGTGGCC GCAGGCGAGA CCTCCGGCCA CCTTGATGAA GTGCTTAACC GACTGGCGGA CTACACCGAG CAGCGCCAGC AGATGCGTAG CCGCATCCAG CAGGCGATGA TCTATCCGTG CGTGCTTACC GTCGTTGCGA TTGCCGTGGT CAGCATTTTG CTATCCGTTG TGGTACCAAA AGTCGTCGAG CAATTTATTC ATATGAAGCA GGCGCTGCCG CTTTCAACCC GTGTGTTGAT GGGAATAAGC GATGCCGTGC GCACATTCGG GCCATGGGTG GTGCTGGCGC TGTTGGCCGC GTTCATGGCG CTACGCGTGA TGCTGCGACA GGAAAAACGG CGTATCAATT TCCATCGGCG TTTGCTGTAT TTGCCACTGC TTGGCCGTAT TGCTCGCGGT CTGAATACGG CACGCTACGC GCGGACGCTC AGTATTCTCA ACGCCAGTGC CGTGCCGCTG TTGCAGGCGA TGCGCATTAG CGGCGATGTG ATGAGTAATG ACTATGCCCG CCATCGGCTC TCTCTGGCGA CGGATGCGGT ACGAGAAGGC GTCAGTCTGC ATAAAGCGCT GGAACAGACG GCGCTCTTTC CCCCGATGAT GCGTCATATG ATCGCCAGCG GTGAACGCAG TGGCGAGTTG GACAGCATGC TGGAACGGGC GGCGGATAAT CAGGATCGGG AATTCAGTTC GCAGATGACG CTGGCGCTGG GGTTATTTGA ACCTCTGCTG GTGGTCAGCA TGGCGGCGGT GGTGCTGTTT ATCGTACTGG CGATTTTACA GCCGATTCTG CAACTGAATA CGTTAATGAG TTCGTAA
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Protein sequence | MAQYHYQALD AQGKKCRGTQ EADSARQARQ LLRERGLVPL SVDEGRGDQQ KAGSTGFSLR RKIRISTSDL ALLTRQLATL VAASLPLEEA LDAVAKQSEK PHLSQLMAAV RSKVMEGHSL ADAMKCFPSS FERLYCAMVA AGETSGHLDE VLNRLADYTE QRQQMRSRIQ QAMIYPCVLT VVAIAVVSIL LSVVVPKVVE QFIHMKQALP LSTRVLMGIS DAVRTFGPWV VLALLAAFMA LRVMLRQEKR RINFHRRLLY LPLLGRIARG LNTARYARTL SILNASAVPL LQAMRISGDV MSNDYARHRL SLATDAVREG VSLHKALEQT ALFPPMMRHM IASGERSGEL DSMLERAADN QDREFSSQMT LALGLFEPLL VVSMAAVVLF IVLAILQPIL QLNTLMSS
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