Gene PC1_2858 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2858 
Symbol 
ID8133812 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3230236 
End bp3231462 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content57% 
IMG OID644866146 
Productgeneral secretion pathway protein F 
Protein accessionYP_003018423 
Protein GI253689233 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1459] Type II secretory pathway, component PulF 
TIGRFAM ID[TIGR02120] general secretion pathway protein F 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACAGT ACCACTATCA GGCGCTGGAT GCGCAAGGGA AAAAATGCCG TGGCACTCAG 
GAAGCGGACT CTGCCAGACA GGCGCGTCAG CTATTGCGGG AGCGCGGACT GGTGCCGCTG
TCGGTTGATG AAGGTCGCGG TGACCAGCAG AAAGCCGGTT CTACGGGGTT TTCCCTACGC
CGCAAAATTC GTATCAGTAC CTCAGATTTG GCTCTGTTGA CTCGCCAGTT GGCGACGCTG
GTGGCGGCGT CATTGCCGCT GGAAGAAGCG CTGGATGCGG TGGCGAAACA GAGCGAAAAG
CCGCATCTGA GCCAGTTGAT GGCGGCAGTG CGCAGCAAGG TTATGGAAGG GCATTCGCTG
GCCGATGCGA TGAAATGTTT TCCCAGCAGC TTTGAGCGAC TGTATTGCGC GATGGTGGCC
GCAGGCGAGA CCTCCGGCCA CCTTGATGAA GTGCTTAACC GACTGGCGGA CTACACCGAG
CAGCGCCAGC AGATGCGTAG CCGCATCCAG CAGGCGATGA TCTATCCGTG CGTGCTTACC
GTCGTTGCGA TTGCCGTGGT CAGCATTTTG CTATCCGTTG TGGTACCAAA AGTCGTCGAG
CAATTTATTC ATATGAAGCA GGCGCTGCCG CTTTCAACCC GTGTGTTGAT GGGAATAAGC
GATGCCGTGC GCACATTCGG GCCATGGGTG GTGCTGGCGC TGTTGGCCGC GTTCATGGCG
CTACGCGTGA TGCTGCGACA GGAAAAACGG CGTATCAATT TCCATCGGCG TTTGCTGTAT
TTGCCACTGC TTGGCCGTAT TGCTCGCGGT CTGAATACGG CACGCTACGC GCGGACGCTC
AGTATTCTCA ACGCCAGTGC CGTGCCGCTG TTGCAGGCGA TGCGCATTAG CGGCGATGTG
ATGAGTAATG ACTATGCCCG CCATCGGCTC TCTCTGGCGA CGGATGCGGT ACGAGAAGGC
GTCAGTCTGC ATAAAGCGCT GGAACAGACG GCGCTCTTTC CCCCGATGAT GCGTCATATG
ATCGCCAGCG GTGAACGCAG TGGCGAGTTG GACAGCATGC TGGAACGGGC GGCGGATAAT
CAGGATCGGG AATTCAGTTC GCAGATGACG CTGGCGCTGG GGTTATTTGA ACCTCTGCTG
GTGGTCAGCA TGGCGGCGGT GGTGCTGTTT ATCGTACTGG CGATTTTACA GCCGATTCTG
CAACTGAATA CGTTAATGAG TTCGTAA
 
Protein sequence
MAQYHYQALD AQGKKCRGTQ EADSARQARQ LLRERGLVPL SVDEGRGDQQ KAGSTGFSLR 
RKIRISTSDL ALLTRQLATL VAASLPLEEA LDAVAKQSEK PHLSQLMAAV RSKVMEGHSL
ADAMKCFPSS FERLYCAMVA AGETSGHLDE VLNRLADYTE QRQQMRSRIQ QAMIYPCVLT
VVAIAVVSIL LSVVVPKVVE QFIHMKQALP LSTRVLMGIS DAVRTFGPWV VLALLAAFMA
LRVMLRQEKR RINFHRRLLY LPLLGRIARG LNTARYARTL SILNASAVPL LQAMRISGDV
MSNDYARHRL SLATDAVREG VSLHKALEQT ALFPPMMRHM IASGERSGEL DSMLERAADN
QDREFSSQMT LALGLFEPLL VVSMAAVVLF IVLAILQPIL QLNTLMSS