Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2854 |
Symbol | |
ID | 8133808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3228052 |
End bp | 3228702 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644866142 |
Product | general secretion pathway protein J |
Protein accession | YP_003018419 |
Protein GI | 253689229 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4795] Type II secretory pathway, component PulJ |
TIGRFAM ID | [TIGR01711] general secretion pathway protein J [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.400784 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAATA AAACAGGGAC GTGTAATCAA ACAAGAAGGG AGCGAGAGAT CGCACGGCAG AAACGCCAAC AGGGGTTTAC TCTGCTGGAG ATGATTCTGG CGATTGCTAT CTTTGCCGCG CTGAGCCTCA GCGCGTTTCA GGTGCTGAAT GGCGTGATGC GTAACGATGA AATTTCGCAG CGCAAGGCCG AACGTCTGGC TGAAATACAG CGTGCCTTTT CACAAATGGA CAGCGATTTC TCCCAGATGA TCGCACGTGG CAGCAGAGGA AGTACCTCGA TATTTTATGC TGGCCGCGAT CAGTTAAAAA GCGATGACTG GGGCGTCAGC TTTATGCGTA ATGGCTGGCA GAACCCGTTT GGCATATTGC CTCGCTCTGA ACTTCAGCCC GTAGCCTATC GGCTACGGGA ACACACTCTG GAACGGTTAA CCCACACGGT GCCTGATCCG ATTGAGGGGC TCGATCCCGG TGTAAAACCG CTTCTCACGC AGGTCGATGG CTTCCGCCTG CGCTTTTTCA GCAATAAAAC CTGGCGCGAT CGCTGGGATA ACACGACGCA ATTGCCACAA GGGATCGAAG TGGTGTTGAC CTTAAGGGAT TATGGCGAAA TGTCGCGTAT GTTTTTGATT ACCACCGGGC CGGCTAAATG A
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Protein sequence | MFNKTGTCNQ TRREREIARQ KRQQGFTLLE MILAIAIFAA LSLSAFQVLN GVMRNDEISQ RKAERLAEIQ RAFSQMDSDF SQMIARGSRG STSIFYAGRD QLKSDDWGVS FMRNGWQNPF GILPRSELQP VAYRLREHTL ERLTHTVPDP IEGLDPGVKP LLTQVDGFRL RFFSNKTWRD RWDNTTQLPQ GIEVVLTLRD YGEMSRMFLI TTGPAK
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