| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2790 |
|---|
| Symbol | |
|---|
| ID | 8133743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3163561 |
|---|
| End bp | 3164340 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644866078 |
|---|
| Product | cationic amino acid ABC transporter, periplasmic binding protein |
|---|
| Protein accession | YP_003018356 |
|---|
| Protein GI | 253689166 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.239509 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC TGATCAAAGT TTTGCCGTTG GCACTCATTC TGGCTGCGGG CAGCGCGATG
GCGGAGATTC CTAAGAACAT TAAAATCGGC ACCGATCCTA CCTATGCGCC TTTTGAATCC
AAAAATGCCA GCGGTGAACT GGTTGGGTTT GATATCGATC TGGCGAAAGA GCTGTGCAAA
CGTATTCAGG CTAACTGTAC CTTTGTGGAA AGTGACTTTG ACGCGTTAAT TCCTTCCCTT
AAAGCTAAAA AAATTGATGC CATCATCTCT TCTCTGTCCA TCACCGAAAA ACGCCAGCAG
GAAATTGCCT TCACTGAGAA GCTGTATGCC GCCAACGCGC GTCTGATTGC GAAGAAGGGC
GCGAGCATCG AGCCAACGCT GGCGTCTCTG GGCGGCAAGC GTGTCGGTGT TTTGCAGGCA
TCAACGCAGG AGGCATTTGC TAACGCGAAC TGGCAGCCAA AAGGCGTTGA GGTTGTGGCT
TACCAAAACC AGGATCTGAT TTATGCAGAC CTGACCGCAG GCCGTATCGA TGCCGCCTTT
CAGGATGAAG TAGCAGGAAG CGAAGGTTTC CTGAAGCTTG ATATGGGCAA AGACTACGCG
TTTGCTGGCC CAGCGGTGAA AGATGACAAA TTCTTCGGTG TGGGGACGGG GATGGGGCTG
CGTAAAGCGG ATACCGAGCT GAAAGCTGCG CTGGATAAAG CCTTTGAAGA GATGCGTAAA
GACGGTACCT ACGATACCTT CGCGAAAAAA TACTTCGATT TTGACGTCTA CGGCGGCTAA
|
|---|
| Protein sequence | MKKLIKVLPL ALILAAGSAM AEIPKNIKIG TDPTYAPFES KNASGELVGF DIDLAKELCK
RIQANCTFVE SDFDALIPSL KAKKIDAIIS SLSITEKRQQ EIAFTEKLYA ANARLIAKKG
ASIEPTLASL GGKRVGVLQA STQEAFANAN WQPKGVEVVA YQNQDLIYAD LTAGRIDAAF
QDEVAGSEGF LKLDMGKDYA FAGPAVKDDK FFGVGTGMGL RKADTELKAA LDKAFEEMRK
DGTYDTFAKK YFDFDVYGG
|
|---|
| |