| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2786 |
|---|
| Symbol | |
|---|
| ID | 8133739 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3160291 |
|---|
| End bp | 3161196 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644866074 |
|---|
| Product | domain of unknown function DUF1731 |
|---|
| Protein accession | YP_003018352 |
|---|
| Protein GI | 253689162 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1090] Predicted nucleoside-diphosphate sugar epimerase |
|---|
| TIGRFAM ID | [TIGR01777] conserved hypothetical protein TIGR01777 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00697723 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTAC TCATAACAGG CGGAACCGGC CTTATTGGCC GCCATCTTAT CCAACGATTA
CAGCTGCTTT CCCATCACAT TACGGTACTG ACACGCGATC CTGAACGCGC CCGAGGTATT
CTCGGCAATC AGGTGGAATA TTGGTCAACG CTGAATAACA TCACCTCACT GAACGACTTT
GATGGCGTCA TCAATCTGGC AGGCGAGCCT ATCGCCGATA AGCGGTGGAC GCCACAGCAA
AAACAGCTGC TGGCAAAGAG CCGCTGGAAC ATCACCGAAC AACTCGCCAC GCTGATAAAA
GCCAGCAGTG AACCACCTGC CGTTTTTATC TCTGGTTCTG CTGTCGGGTA TTATGGTGAT
CAGGGAGAAG CGCTGGTTAC GGAAGATGAA TCTCCGGTCG ATGAATTCAC GCATCACTTA
TGCGCTCGCT GGGAAGCGCT GGCTCAGTCC GCCGAAAGCG ATCAAACCCG AGTCTGCCTG
CTGCGCACCG GCATTGTGCT TTCAGCACAG GGCGGCGCGT TGGCAAAAAT GCTGCCGATT
TTCCGGCTCG GGCTTGGCGG ACCGATGGGT TCTGGCAAGC AATATATGCC GTGGATTCAT
ATTGATGACA TGGTTAACGG TATCATTTAC CTGCTAGACC AACCGATATT GAGCGGCCCC
TTCAATATGG TTGCGCCTTA TCCGGTTCAT AATGAGCAAT TTTCCGCCAT GCTGGCACAC
GTACTGGATC GCCCCGGTTT TCTGCGAGCG CCCGCTTTTG CGATCAAATT GCTGATGGGA
GAAGCCTCGA CGCTGGTCTT GGGCGGACAA CGCGCCATCC CACAGCGATT AGAAGCCGCA
GGCTTTGGTT TCCGTTTCTT TGAGCTGGAA GAAGCCCTGC AGGACGTCGT CAAAAAACCG
GGCTGA
|
|---|
| Protein sequence | MQLLITGGTG LIGRHLIQRL QLLSHHITVL TRDPERARGI LGNQVEYWST LNNITSLNDF
DGVINLAGEP IADKRWTPQQ KQLLAKSRWN ITEQLATLIK ASSEPPAVFI SGSAVGYYGD
QGEALVTEDE SPVDEFTHHL CARWEALAQS AESDQTRVCL LRTGIVLSAQ GGALAKMLPI
FRLGLGGPMG SGKQYMPWIH IDDMVNGIIY LLDQPILSGP FNMVAPYPVH NEQFSAMLAH
VLDRPGFLRA PAFAIKLLMG EASTLVLGGQ RAIPQRLEAA GFGFRFFELE EALQDVVKKP
G
|
|---|
| |