| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2727 |
|---|
| Symbol | |
|---|
| ID | 8133680 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3088467 |
|---|
| End bp | 3089399 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644866015 |
|---|
| Product | putative transposase YhgA family protein |
|---|
| Protein accession | YP_003018293 |
|---|
| Protein GI | 253689103 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5464] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01784] conserved hypothetical protein (putative transposase or invertase) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCATCGC ACGATGCGAT CTTTAAACAG TTTCTGAGCG ACATTGCCGT CGCACGGGAT
TTTCTGACCA TTCATTTGCC GAATGAAATC CGCGAGCGCT GTGATTTCAG CACGCTGCAA
CTGGAGTCGG CGTCGTTTAT TGATGAAAAG CTGTGTGCGC GGATATCGGA CGTGCTGTAC
TCGCTGCGCA CCACCGCGGG TAAAGGGTAC ATTTACTGTG TGATTGAACA CCAAAGCCGC
CCGGAAAAGC AGATGGCTTT CCGACTGCTG CGTTATTGTC TGGCTGCCAT GCAGCAACAT
CTGGATCAGG GACACGATCG CTTACCGCTG GTGGTACCGC TGCTGTTTTA TCACGGTAAG
ACCCGTCCTT ATCCCTACCC CCTTCGCTGG CTGGACAGCT TTGCCGATCC CGTACTAGCA
CAGGCGCTGT ATGAACAGCC TTTCCCACTG GTGGATTTAA CTGTCATGCC GGACGATGAG
ATTCGCACGC ATCGACGTAT GGCGTTACTG GAACTGGTAC AGAAGCATAT TCGTACCCGT
GATATGCTGG AGTTGGCGCG AGAGATTGGG TTACTATTTG AACGCTGGTC GGTGCCGCTG
ACTCAGCGTC GGGCGCTGTT ATTTTATATT GCACAAGTGG GAAACACATC CAAACCCGCA
GACTTCATTG ACGCACTGGC TGCACCGCTA TCAACCGGTC AGGAGGACAT TATGACGATT
GCAGAACAAT TGAAAAAAAT GGGATTCGAG GAAGGCATCC AACGCGGTAT TCAGCAAGGA
TTGGAGCAGG GCATGAAAAA CAGTGCCAGA TTGATTGCCC GTAATTTATT GCTAACGGGG
ATGGATAAGA ATAGCGTGCA ACAGGTTACT CAGCTTGAGG AAGAAGAGTT GGAGCAGTTG
GTCACGGCTA TCCTGCATGA AACACAGCAT TAA
|
|---|
| Protein sequence | MPSHDAIFKQ FLSDIAVARD FLTIHLPNEI RERCDFSTLQ LESASFIDEK LCARISDVLY
SLRTTAGKGY IYCVIEHQSR PEKQMAFRLL RYCLAAMQQH LDQGHDRLPL VVPLLFYHGK
TRPYPYPLRW LDSFADPVLA QALYEQPFPL VDLTVMPDDE IRTHRRMALL ELVQKHIRTR
DMLELAREIG LLFERWSVPL TQRRALLFYI AQVGNTSKPA DFIDALAAPL STGQEDIMTI
AEQLKKMGFE EGIQRGIQQG LEQGMKNSAR LIARNLLLTG MDKNSVQQVT QLEEEELEQL
VTAILHETQH
|
|---|
| |