| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2724 |
|---|
| Symbol | |
|---|
| ID | 8133677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3086072 |
|---|
| End bp | 3087055 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644866012 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_003018290 |
|---|
| Protein GI | 253689100 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAGA CGCGCTTTTC TCACCTGGCT GCATGCGTGT TGGCTACAGG GGTAATGACC
TCGGTTCAGG CAGCGGATGA GACATTGTCA TTGAAGGGAA AAACCATTGG CGTTGCCGTG
GTGGGAACAC AGCACTTTTG GGACCGTGAG GCCTACAAAG GGGCAACCGA AGAAATTGAG
AAACTCGGTG GGCAGGTCGT GGGAGTGGAT GGAGGGCGTG ATAATCAGGT TCATGCCAAT
AACCACGATA TTCTGCTGGC GCGCAAGGTC GATGCGGTGA TCAGCATTCT CGGCGACAGC
GCGGTAGAGC CGAAGTTTAA AGCATTACGT GAGGCAAAGA TTCCGGTTTT TACCGTCGAT
CATGTCTCGT CTTATTCCAT CAATAACACG ACGTCAGATA ACTACGCGAT CGGCTCGACG
ATCGGGCGTT ATACAGCGGA TGCGCTGGGC GGAAAAGGGA ATATCGCCGT TTTCAACGCC
TTCTCCAACG CGCTGCGTAT CTGCGGTATT CGCTATGACT TGTGGAAATA CGTTCTGCAA
GACTATCCGG GGATCAAAAT CATTCAGCCT GAACTGGCTG AACAATATTC CAACTCACCG
GAAGACGCGC GCAAGAAAAC CCTTGAACTG CTGAGCCAGC ATCCGAAAGG CACGCTGGAT
GCGATCCACG TCGCCTGCTG GGATCAGCCT GCCATCGGCG TGGTTCAGGC ATTGGAAGAA
ACCGGGCGTG ACAAGGACGT GAAGGTCACC GCGATTGATG CTGGGCCAGA AACGTTGGAA
ATTATGGCGG AAAAAGGCAG TCCGTTTGTT GCCAACGTTG CGCAGCAGCC GCGTCTTATC
GGTACAACAT CGGCGAAAAA CGTTGCCCGT TATTTCGCGG GTGCCACGCT GCTGCCGCAG
ACGTTTGTGC CGGTCTTGCC CGTCAAAGGA GAGGCAGAAG CCAAGGTGGT CTATAAACAG
CTTGGCTATG GCGACCTGAA ATAA
|
|---|
| Protein sequence | MMKTRFSHLA ACVLATGVMT SVQAADETLS LKGKTIGVAV VGTQHFWDRE AYKGATEEIE
KLGGQVVGVD GGRDNQVHAN NHDILLARKV DAVISILGDS AVEPKFKALR EAKIPVFTVD
HVSSYSINNT TSDNYAIGST IGRYTADALG GKGNIAVFNA FSNALRICGI RYDLWKYVLQ
DYPGIKIIQP ELAEQYSNSP EDARKKTLEL LSQHPKGTLD AIHVACWDQP AIGVVQALEE
TGRDKDVKVT AIDAGPETLE IMAEKGSPFV ANVAQQPRLI GTTSAKNVAR YFAGATLLPQ
TFVPVLPVKG EAEAKVVYKQ LGYGDLK
|
|---|
| |