| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2700 |
|---|
| Symbol | |
|---|
| ID | 8133653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3063311 |
|---|
| End bp | 3064717 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644865988 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_003018266 |
|---|
| Protein GI | 253689076 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGCAATT TTTGGCGCCA CCTGAGAATC CCAACGCTCG TACGGAGAAT TATTATCGCC
CAAATGCTAT TGCTTACGCT GCTTTGGTGT CTTTTTCTGA CCTACGTTTT ATGGGAGAAC
TTGCGCAGCC CCGCTATGCT ATTGGGCAAC AAGACTTACG AAACCATTCT TACATTGGTT
GATCGTATGG GGGATCGCCC GCAGGATCTA ACCGATGTGC TGGAAAAGTT TAGCAAGGCG
TTGCAGGAAG GTTATGGCGG AGGGGAAGAT CCAGCACTGT CAATCAGCCT AATCGTTCGG
AAGAATAAAG AGATAATTTA TTCATCTGAC GGCGCTCCGG TGGGGGTGAG AAACACCCGA
TATGGGAAAA TTCAGAGTAT TCAGAGTGAT GGTCGCACTT GGACTAGCCG TACGCTAAAG
TCCGCGAACT CCGATGCGGA GGTAACGCTG GTCACCCCTG CCGGAGGCTG GAACTTCTTT
ATATACCTGA ACTCGCGTGG ATACTACATA TTGCCGCTGC TGGTATGCAT TCCTTTTCTT
TTGTTTCCCG CGTGGCTGTC AATCCGCATT GCAATGCGCC CCTGGAACAA GGTGGTAAAT
GAAATTGCCT TACGCACTCC AGAAGACCTC TCTCCTTTAA AAGAAGTACC AAAGCACAGG
GAGCTTCGCC AAATGGTGGA CGCTATTAAT ATATTTCTTG CCAGGGTGCG AGAAAGTGCT
GAAAGGGAAC GGGTTTTCAT TGCAGATGCT GCTCATGAGC TGCGTACCCC TCTGGCTGCG
ATGCGTATCA ATGTTGAGGC TTTGCAGTCC TATATAAGCA GCGATAATCA ACAGGCGTTG
CTTGCGGGGA TCATTCGCAG CAATAGCCGT GCTGCTCGTC TCGTTAATCA ACTGCTGCTG
CTGATGCACA GCGAAGCGCG CATTGACACG GTTATGGAGC CTGTGCCGCT GACGACGCTC
ATACAAGAGC GAATGGCCGT GTTGGCACCG CTAGCGGCTG GGCGCCGGAT TGAACTTGAA
TTCTACTCCC ATGATGAAGT TTGGGTTACC GGTGTTAGGG AACGCCTGAT GTCGCTGATT
GACAACGTGA TTGAAAATGC CGTGAAGTAC AGTCCTGAGG GCGGACGGGT TGAGGTAGAG
GTACGATCAT TAGATAAATC CACGCAGTTA CGTGTCTCAG ATGCAGGGCC CGGTATTCCC
GTTGAATTGA GGGAGCGCGT GTTCGATAGA TTTTTTCGCG ATCCCAATCA GACGCAAAGT
GGGAGCGGGC TGGGGCTTGC AATCGTCAAA GCGGTTGCGC AGCAACACAA CAGCAATGTG
TACCTAAGTA CGTCTGCAGA AGGCGGGCTC ATGGTAACGG TTGACTTTCC ACACCACGAT
TCCGTCTTGA ACCAAAGAAT AAAATGA
|
|---|
| Protein sequence | MCNFWRHLRI PTLVRRIIIA QMLLLTLLWC LFLTYVLWEN LRSPAMLLGN KTYETILTLV
DRMGDRPQDL TDVLEKFSKA LQEGYGGGED PALSISLIVR KNKEIIYSSD GAPVGVRNTR
YGKIQSIQSD GRTWTSRTLK SANSDAEVTL VTPAGGWNFF IYLNSRGYYI LPLLVCIPFL
LFPAWLSIRI AMRPWNKVVN EIALRTPEDL SPLKEVPKHR ELRQMVDAIN IFLARVRESA
ERERVFIADA AHELRTPLAA MRINVEALQS YISSDNQQAL LAGIIRSNSR AARLVNQLLL
LMHSEARIDT VMEPVPLTTL IQERMAVLAP LAAGRRIELE FYSHDEVWVT GVRERLMSLI
DNVIENAVKY SPEGGRVEVE VRSLDKSTQL RVSDAGPGIP VELRERVFDR FFRDPNQTQS
GSGLGLAIVK AVAQQHNSNV YLSTSAEGGL MVTVDFPHHD SVLNQRIK
|
|---|
| |