Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2680 |
Symbol | |
ID | 8133633 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 3039313 |
End bp | 3040785 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644865968 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_003018246 |
Protein GI | 253689056 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTATCCC TCCGTACCCT TGCTTTGGTG GTAACGGCTG GTGCAATAGC GGGTTGCGCG GTTGGACCGG ATTATCACCG TCCGGACGCG CCACTCGCGG ATCGTTATCA GACGCAATCT GCCATAAAAT CGTCTTTAGC AGAGCAAGGA AACGTCACTC AGGCAGCCAA CCTTGCCGTC TGGTGGGAAA GCTTTAATGA TCCCTTACTG AGTGAGTTAG TTTCAAGAGC ACTTACACAG AATCTTGATT TGGCCCAGGC ATCCGCACGG ATGAGTCAGG CGCGCGCCGG ACTTGGCACA GCAACTACGG CGCTGCTGCC CTCGGGCAAC ATCAGCGGAC AAGCCGCCCG CGCCTACCAG TCGGTTGAAA CCGCGCAAGG CCAGCTACTC AACGCGGTTC CTGGCTATAA CCGTTACGGC AATGCTTATG AAACCGACCT CAACGCCAGT TGGGAAATTG ATGTATTCGG TGGACTAAGA CGTGATCGTC AGGCGGCACT GGCTGACTAT CAGGCTTCAG AAGCCGGTGT AACCGCCACT CGTCTGGCAA TTGCCGCTCA GACAGCCGAT ACCTATATCA CTCTGCGTGG ATTACAAACG CGCCTGGCGA TCGCCAACAT GCAGGTCAAT ACACAGCAAG AACTGCTGGA TAAGGTACAG CGGCTCCATA GCAAAGGGCT CGCCGCCGAG TATCAGGTTC GTCAGACGGA GGGCGCGCTT TCGCAGGTTC AGGCCACCGT GCCTGCGATC CAGACCGGGA TCGATGCCGC AATGAACGCG TTGGATGTCA TACTCGGTAC GCCTCCCGGT ACGCATCAAG TCCAACTGTC TGCCTCAGGT GACATTCCAC AACCGCCCTC GCTCATAGCA ACGGGTACAC CTGCCGACCT GCTACGCCGC AGGCCGGATA TTATCGTGGC CGAACGCCAT CTCGCGGCGT CCAACGCCCG CATCGGGGTA GCCATCAGCG AGTATTACCC TAAATTCTCA CTCAACGCAC TACTCGGCAG CGCCACATCG GTGTCGAGCG GCAACCTGTT CTCCAGCGGC GCCAGCCAAT CGGCAGGCGT ATTGGGACTA CGCTGGCGGC TCTTCGATTT CGGCCGCATT AACGCTCAGA TCGATCGGGC TAAAGGGCAG GAAGCCGAAG CGCTCGCGGC TTACCGCCTG TCGGTATTAC GCGCGACCGA AGATGTGGAA AACGCCTTGT CGGCCGTAGT CAATCGCGAG GCCCAGTCCG CAACGTTAAC CGCAGGGGAA ACCGCGTTGA CCAGCGCGCG GCAGTCGTCC TTTATCGCCT ATCAGAAAGG GACTGCCAGC CTGATTGATG TCCTCCATGC CGATGAAACC CTGCTGCAAG CTTCCGATGC TCGGGCTCAG GCCCAAACAG AAGCGGCGCG CGCGGCCATC GCCGCCTTCA AGGCGCTCGG CGGCGGCTGG CAGCCTCCGG AAACCACCGC GAAGACGTCA TAA
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Protein sequence | MLSLRTLALV VTAGAIAGCA VGPDYHRPDA PLADRYQTQS AIKSSLAEQG NVTQAANLAV WWESFNDPLL SELVSRALTQ NLDLAQASAR MSQARAGLGT ATTALLPSGN ISGQAARAYQ SVETAQGQLL NAVPGYNRYG NAYETDLNAS WEIDVFGGLR RDRQAALADY QASEAGVTAT RLAIAAQTAD TYITLRGLQT RLAIANMQVN TQQELLDKVQ RLHSKGLAAE YQVRQTEGAL SQVQATVPAI QTGIDAAMNA LDVILGTPPG THQVQLSASG DIPQPPSLIA TGTPADLLRR RPDIIVAERH LAASNARIGV AISEYYPKFS LNALLGSATS VSSGNLFSSG ASQSAGVLGL RWRLFDFGRI NAQIDRAKGQ EAEALAAYRL SVLRATEDVE NALSAVVNRE AQSATLTAGE TALTSARQSS FIAYQKGTAS LIDVLHADET LLQASDARAQ AQTEAARAAI AAFKALGGGW QPPETTAKTS
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