| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2575 |
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| Symbol | fliF |
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| ID | 8133523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2943953 |
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| End bp | 2945677 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644865859 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_003018142 |
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| Protein GI | 253688952 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.1097 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCT CATTAACCGG CGCCGCTACC GGTAAAAATA GCTTTGGCGA AATACTCAAC
CGGTTACGCG CCAATCCGAA GATTCCGCTA TTGATCGCAG CTGCTGCGAC CATTGCCATT
GTCGTCGCGT TAACGCTATG GGCTAAAGGT CCAGATTATC GGGTTCTTTA TAGCAATATA
AATGACCGGG ACGGCGGTGC GATTGTCGGC GAATTAACAA AGCTGAATAT CCCTTATCGC
TTTGCGGAGA GCGGCGGAGC GATCATGATT CCCGCCGAAA AGGTCTATGA GACCCGACTC
CGACTTGCTC AACTTGGCCT GCCAAAAGGT GGGGCAGTTG GCTTTGAATT GCTCGATCAG
GAAAAGTTTG GCATCAGCCA ATTCAGCGAG CAGATTAATT ATCAGCGTGC GCTGGAAGGT
GAGCTGTCCA GAACGATAGA AACGCTCGGC CCTGTTCAGA ATGCGCGAGT TCACCTTGCC
ATACCGAAGC CTTCACTGTT CGTTCGTGAG CAAAAAGCCC CCTCTTCTTC TGTCACCCTA
ACGTTACAGC CAGGCCGTGC ATTAGATGAA GGCCAAATCA ACTCCATCGT TTACATGGTT
TCCAGCAGCG TTGCTGGCCT GCCGCCAGAT AATGTTACGG TCGTCGATCA GACCGGACGT
CTGTTGACTC AGGCGGGTGG AAGCGGTCGC GATCTGAATG CAGCGCAGCT TAAGTACAGC
AACGAAGTTG AAGCCATGTA CCAGCGCCGC ATAGAATCAA TCATCGCCCC CATGGTCGGT
ATGGGTAACG TGCATGCTCA GGTCACCGCA CAAATTGATT TCTCTGCCCG CGAACAGACT
GACGAGCAGT ATCAACCTAA CCAACCGCCA GATAAAGCGG CCGTTCGCTC TCAGCAAACC
AGCCAGAGTG AGCAACGAGG CGGTCCTAAC GTAGGTGGTG TTCCTGGTGC CTTGTCGAAT
CAGCCTGCAC CTGCTCCAAC CGCGCCTATA GCAACACAGC CAAACAATGC CAATGCCAAT
GCGAACAATC AGGCTGGACA GCAAAACCAA AACAATGCAG CGGGTGCGCA AGCCAATGCG
GCAAACGCGA ATACCGCCAT TCAAACATCA AATATTCGTA ATGATGCAAC AACCAACTAT
GAAGTTGATA AGACGATTTT ACATACCAAA CACAGTACGG GTGGTGTAAA GCGTTTGTCT
GCTGCCGTTA TCGTTAACTA CCAGCCACCT GGTGAAGACG GCAAACCGGT TGCACTAACG
GAAGAACAGA TTAAACAGAT TGAAACAGTA GCACGTGAAG CAATGGGCTT TTCTGCTGAA
CGCGGTGATA CATTGAATGT CGTTAATACG CCATTTATGG ACAGCACCGA CGGTTCTGGC
GAACTCCCCT TCTGGCAAAA ACAGGCATTC TTCGATCTGC TGATGGAAGC TGGCCGTTGG
CTGCTGGTTC TGATCGTTGC CTGGATTCTG TGGCGTAAGC TGGTTCGTCC ACAATTGCAG
AGAAAAGCAC AGCAGCAAGA AGCGGCACTG GCAGCGGCTG CCCTGTCTCA AGGTGCAGAC
AACGATGTTA TGGTCAACCT GAGTAGCTCG GAAGTTGAAC AGCAGCGGAA ATCACAACAA
CGCGTCAATG CAGAAATGCA AAGTAACCGC ATACGTGAAA TGGCAGAGAA CGATCCACGC
GTTGTCGCTC TGGTAATTCG TCAATGGATG AGTACTGAAC TATGA
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| Protein sequence | MNASLTGAAT GKNSFGEILN RLRANPKIPL LIAAAATIAI VVALTLWAKG PDYRVLYSNI
NDRDGGAIVG ELTKLNIPYR FAESGGAIMI PAEKVYETRL RLAQLGLPKG GAVGFELLDQ
EKFGISQFSE QINYQRALEG ELSRTIETLG PVQNARVHLA IPKPSLFVRE QKAPSSSVTL
TLQPGRALDE GQINSIVYMV SSSVAGLPPD NVTVVDQTGR LLTQAGGSGR DLNAAQLKYS
NEVEAMYQRR IESIIAPMVG MGNVHAQVTA QIDFSAREQT DEQYQPNQPP DKAAVRSQQT
SQSEQRGGPN VGGVPGALSN QPAPAPTAPI ATQPNNANAN ANNQAGQQNQ NNAAGAQANA
ANANTAIQTS NIRNDATTNY EVDKTILHTK HSTGGVKRLS AAVIVNYQPP GEDGKPVALT
EEQIKQIETV AREAMGFSAE RGDTLNVVNT PFMDSTDGSG ELPFWQKQAF FDLLMEAGRW
LLVLIVAWIL WRKLVRPQLQ RKAQQQEAAL AAAALSQGAD NDVMVNLSSS EVEQQRKSQQ
RVNAEMQSNR IREMAENDPR VVALVIRQWM STEL
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