Gene PC1_2558 details

Gene Information

• Locus tag: PC1_2558
• ID: 8133505
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 2925121
• End bp: 2925759
• Gene Length: 639 bp
• Protein Length: 212 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 644865841
• Product: hypothetical protein
• Protein accession: YP_003018125
• Protein GI: 253688935
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0698] Ribose 5-phosphate isomerase RpiB

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAATTG CACTGATTAA CGAGAACAGC CAGGCTGCCA AAAACGCCAT CATCGCCGAG 
TCTCTGACCA AAGCGGTTGC ACCGTTGGGC CACACTGTAC ACAACTACGG TCAATACGCC 
GTTGAAGATG CCGCACAGCT GACCTACATC CAGAACGGTA TTCTGGCTGC TATTCTGCTG 
AACTCTGGCG CTGCTGATTT CGTTGTGACT GGCTGCGGTA CTGGCCAAGG CGCCATGCTG 
GCTTGTAACT CTTTCCCAGG CGTAATCTGT GGTCTGGTTG TTGACCCATC TGATGCTTAC 
CTGTTCTCTC AGATCAACAA CGGTAACGCC GTGTCCGTTC CTTACGCTAA AGGCTTTGGC 
TGGGGCGCTG AACTGAACCT GGAAAACCTG TTTACCCAGC TGTTCAAAGA AGAAGGCGGC 
CGTGGCTATC CGAGCGATCG CGTTGTTCCT CAACAACGTA ACAAGAAAAT CCTGGATGCC 
GTAAAAGCAG TAACCTACAA CGACCTGATC ACCATTCTGA AAGGTCTCGA TCAGGATCTG 
GTTAAAGGCG CCGTTGCTGG TCCTAAATTC CAGGAATACT TCTTTGCTAA CAGCAAAGAC 
GAAGCACTGA CCAGCTACGT CAAAACGCTG CTGGCGTAA 

 

Protein sequence

MKIALINENS QAAKNAIIAE SLTKAVAPLG HTVHNYGQYA VEDAAQLTYI QNGILAAILL 
NSGAADFVVT GCGTGQGAML ACNSFPGVIC GLVVDPSDAY LFSQINNGNA VSVPYAKGFG 
WGAELNLENL FTQLFKEEGG RGYPSDRVVP QQRNKKILDA VKAVTYNDLI TILKGLDQDL 
VKGAVAGPKF QEYFFANSKD EALTSYVKTL LA