| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2490 |
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| Symbol | |
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| ID | 8133436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2858416 |
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| End bp | 2858997 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644865772 |
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| Product | membrane lipoprotein lipid attachment site |
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| Protein accession | YP_003018057 |
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| Protein GI | 253688867 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
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| TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.527693 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAAGT ATCTAGGTGT GATACTGGCG GCATTGGTAC TGACAGGGTG CCCCAGCCGC
CCACCGGAAC CGACTGAGCC GCCAGCGACG ATTGAGCCCG TTGAGCCTCA AGTGCCAACC
ACGCCAACGC TACCGCCGGG TGAATCTGTA CCGCAACCGC CGAAAATCCA GACGTTGAAC
TGGGAAGCCA GCATTAATCC GCTGGTGGCG CAGATGCTAC AAGCCGATGG CGTCACACCG
GGTAGCATCC TGCTGGTGGA TAGTGTGAAA AACAACACTA ACGGTTCATT GCCGATTGCG
AAAGCGACAG GTGCGCTGTA CAGCGCGTTA TCTTCGGGCA AGGCGTTTAC GCTGGTGCCG
CGTGAGCAGT TGGCCGCCGC GAAACAAACG CTGGGTCTGT CGGTTGATGA CAGTTTAGGG
TCGCGCAGTA AGGCGATTGG CCTGGCGCGT TATGTCAGCG CACAGTATGT GCTGTATAGC
GACGTCAGCG GCGATGTGAA ATCGCCACAG ATCGACATGC AACTGATGCT AGTGCAGACC
GGTGAAATTG TATGGTCAGG CAATGGCGCC GTTCAGCATT AA
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| Protein sequence | MKKYLGVILA ALVLTGCPSR PPEPTEPPAT IEPVEPQVPT TPTLPPGESV PQPPKIQTLN
WEASINPLVA QMLQADGVTP GSILLVDSVK NNTNGSLPIA KATGALYSAL SSGKAFTLVP
REQLAAAKQT LGLSVDDSLG SRSKAIGLAR YVSAQYVLYS DVSGDVKSPQ IDMQLMLVQT
GEIVWSGNGA VQH
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