| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2477 |
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| Symbol | |
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| ID | 8133423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2841296 |
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| End bp | 2842498 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644865759 |
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| Product | outer membrane-specific lipoprotein transporter subunit LolC |
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| Protein accession | YP_003018044 |
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| Protein GI | 253688854 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.312785 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATCAAC CTGTCGCTTT ATTTATTGGC CTGCGCTACA TGCGTGGGCG TGCATCAGAC
CGCTTCGGCC GGTTTGTCTC CTGGTTATCC GCCATTGGTA TCACGCTGGG CGTGATGGCA
CTGGTCACCG TGCTTTCCGT GATGAATGGC TTCGAGCGCG AACTGGAAGA CAATATTCTG
GGCGTGATGC CTCAAGCGGT CATCTCTACA CCGCAAGGTT CGCTGAACCC GGCGTTGATT
CCTGCTTCCT CCTTAGACTC GCTGGACGGC GTGACGCGCA TTGCGCCGTT GACGACGGGC
GATGTGGTGC TGCAAAGCGC CCGCAGCGTT GCCGTGGGCG TAATGTTAGG GATTGATCCT
GACGAGCAGG AGCCGCTGTC GCGCTATCTG GTCAACGTCA AACAGCAGCA GCTGCAACCC
GGTCAGTATC AGGTCATTTT GGGCGAAAAA CTGGCCGCAC AGCTAGAGGT TAAAGCTGGC
GATCAGATTC GCATGATGGT GACGAGTGCC AGCCAGCTAA CGCCGATGGG GCGTATTCCC
AGCCAGCGTA TCTTCACCGT TGTCGGCACC TTTGCCGCGA ACAGCGAAGT GGATAGCTAT
CAGCTGTTGG TCAATCAGCA GGATGCCTCT CGATTGATGC GCTATCCGGC GAACCACATT
ACTGGCTGGC GTTTGTGGCT GGAAAAACCG CTGTCGGTTG ATACGTTGAG CACGCAAACG
CTGCCGGAAG GCACGGTCTG GAAAGACTGG CGCGAACGTA AAGGCGAGCT GTTTCAGGCC
GTGCGCATGG AGAAAAACAT GATGGGGCTG CTGCTCAGCC TGATCGTGGC CGTGGCCGCT
TTCAACATTA TTACCTCGCT GGGTTTACTG GTGATGGAAA AACAGGGTGA AGTCGCCATT
TTGCAAACGC AGGGGCTGAC TCAACGCCAG ATTATGGCGG TGTTTATGGT GCAGGGGGGC
AGCGCTGGTG TGATTGGCGC GTTGTTAGGG GCATTGCTGG GGACGCTATT GGCCAGCCAA
CTGAATACGC TGATGCCAAT ACTGGGCGTC TTGCTTGATG GCGCCGCGTT ACCTGTGGAT
ATTGATCCCG CGCAGGTGGT GACCATTGCC ATTTCCGCGA TGGTGATTGC TCTCTTATCA
ACACTTTACC CGTCATGGCG CGCCGCCGCC GTTCAACCCG CTGAGGCTTT ACGCTATGAG
TAA
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| Protein sequence | MYQPVALFIG LRYMRGRASD RFGRFVSWLS AIGITLGVMA LVTVLSVMNG FERELEDNIL
GVMPQAVIST PQGSLNPALI PASSLDSLDG VTRIAPLTTG DVVLQSARSV AVGVMLGIDP
DEQEPLSRYL VNVKQQQLQP GQYQVILGEK LAAQLEVKAG DQIRMMVTSA SQLTPMGRIP
SQRIFTVVGT FAANSEVDSY QLLVNQQDAS RLMRYPANHI TGWRLWLEKP LSVDTLSTQT
LPEGTVWKDW RERKGELFQA VRMEKNMMGL LLSLIVAVAA FNIITSLGLL VMEKQGEVAI
LQTQGLTQRQ IMAVFMVQGG SAGVIGALLG ALLGTLLASQ LNTLMPILGV LLDGAALPVD
IDPAQVVTIA ISAMVIALLS TLYPSWRAAA VQPAEALRYE
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