| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2476 |
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| Symbol | lolD |
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| ID | 8133422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2840596 |
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| End bp | 2841303 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644865758 |
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| Product | lipoprotein transporter ATP-binding subunit |
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| Protein accession | YP_003018043 |
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| Protein GI | 253688853 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.637177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTAATT TATCGTTATT GCAGTGCAAC AACCTGTCCA AGCGCTATCA GGACGGCAAG
CTGTCGACTG ACGTGTTGCG CGACGTCTCT TTTGAGATGA GCAGCGGGGA GATGATGGCA
ATCGTCGGGA GTTCCGGTTC GGGCAAAAGT ACGTTGCTGC ATGTGCTGGG CGGGTTGGAT
ACGCCGACGT CGGGCGAGGT TATCTTTAAA GGTCAGTCGC TGAATACACT TTCGGCGGCG
GCAAAGGCAG ATTTACGCAA CCGCGAGCTG GGTTTTATTT ATCAATTCCA CCATCTGTTG
CCGGATTTCA CCGCGCTGGA AAATGTGGCG ATGCCGCTGC TGATTGGTAA AGTGCCAACC
TCGCAGGCGC AGGATAAAGC ACGGGAAATG CTGGCGGCTG TCGGGCTGGA GGCGCGCAGC
CACCACCGTT CGTCGGAGCT GTCCGGCGGT GAGCGGCAGC GCGTCGCTAT TGCCAGAGCG
TTGGTTAACA GCCCGTCGCT GGTGCTGGCG GACGAGCCGA CGGGTAACCT CGACCAGCGC
ACGGCGGATA CCATTTTCGA ACTGCTGGGA GAGCTAAACG TCCGGCAGGG CACTGCGTTT
TTGGTGGTGA CGCACGATCT GCAACTGGCT AGCCGACTGA ACCGCCAACT GGAAATGCGT
GATGGTCAAT TGCAGCAAGA GCTGACCCTG ATGGGAGCGC GGCAATGA
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| Protein sequence | MSNLSLLQCN NLSKRYQDGK LSTDVLRDVS FEMSSGEMMA IVGSSGSGKS TLLHVLGGLD
TPTSGEVIFK GQSLNTLSAA AKADLRNREL GFIYQFHHLL PDFTALENVA MPLLIGKVPT
SQAQDKAREM LAAVGLEARS HHRSSELSGG ERQRVAIARA LVNSPSLVLA DEPTGNLDQR
TADTIFELLG ELNVRQGTAF LVVTHDLQLA SRLNRQLEMR DGQLQQELTL MGARQ
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