| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2475 |
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| Symbol | |
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| ID | 8133421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2839352 |
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| End bp | 2840599 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644865757 |
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| Product | outer membrane-specific lipoprotein transporter subunit LolE |
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| Protein accession | YP_003018042 |
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| Protein GI | 253688852 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family
[TIGR02213] lipoprotein releasing system, transmembrane protein LolE |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.566414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTTC CTCCGCTCTC GTTGCTGATT GGCCTGCGTT TTAGCCGTGG CCGTCGGCGT
GGCGGCATGG TTTCGCTGAT TTCAGTTATT TCGACGTTAG GGATTGCCCT CGGCGTGGCG
GTGTTGATTC TTGGCCTGAG TGCGATGAAT GGCTTTGAAC GTGAACTGAA TAACCGCATC
CTCGCCGTCG TGCCACATGG CGAGATCGCG CCGGTCAATC AACCTTTCGA CGGCTGGCAG
GACATCCTGC CTAAAATCGA ACAGGTGCCT GGTGTTGCAG CCGCAGCGCC TTATATCAAT
TTCACCGGTC TGCTGGAGAA CGGTGCCAAA CTTCAGGCAG TTCAGGTAAA AGGTGTCGAT
CCGCAGCAGG AGAAACGTCT CAGCGCGCTG CCTAATTATG TTCTCAATGA TGCCTGGCAG
CGGTTTCACG CGGGCGAACA GCAAGTCATC ATTGGGCAAG GTGTGGCAAA GGCGCTGAAT
GTTGCGCAAG GGGACTGGGT CACGGTGATG ATCCCGAACA GCGACCCGGA AATGAAGCTG
ATGCAGCCTA AACGCATCCG GCTGCACATC AGCGGCATCT TACAATTGAG CGGTCAGCTC
GATCACGGTT TAGCGCTGAT TCCACTTGCG GATGCCCAAC AGTATCTGGA TATGGGGCAG
AGTGTAACGG GGATCGCCAT CAAAGCTAAC GACGTGTTCT CCGCCAATAA ACTGGTGCGG
GATGCAGGTT TAGTCACGAA GTCTTATGTC ACTATTCGTA GCTGGATTGG CACCTATGGC
TATATGTATC GGGACATCCA GATGGTGAGA ACTATCATGT ATCTGGCAAT GATCCTGGTG
ATTGGCGTGG CCTGTTTTAA TATTGTTTCA ACGCTGGTGA TGGCGGTGAA GGATAAAAGC
AGCGATATCG CGGTCCTGCG TACGCTGGGA GCGTCAGACG GACTGATTCG AGCGATCTTT
GTGTGGTATG GGCTACTGGC CGGACTGCTG GGCAGCGTGA TAGGCGCGGT GGTTGGTGTG
ATCGCCACCT TGCAATTGAC GCCAATTATT CACGGCATTG AAGCCCTCAT CGGCCATAAG
CTGTTGTCTG GCGACATCTA TTTTATCGAT TTTCTACCGT CAGAATTGCA CTTGATGGAT
GTCTTTATCG TATTAGGAAC CTCGCTGGTA CTGAGCCTGA TTGCCAGCTG GTATCCGGCA
CGGCGCGCCA GCCGGATTGA CCCTGCCCGC GTCTTGAGCG GACAGTAA
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| Protein sequence | MTFPPLSLLI GLRFSRGRRR GGMVSLISVI STLGIALGVA VLILGLSAMN GFERELNNRI
LAVVPHGEIA PVNQPFDGWQ DILPKIEQVP GVAAAAPYIN FTGLLENGAK LQAVQVKGVD
PQQEKRLSAL PNYVLNDAWQ RFHAGEQQVI IGQGVAKALN VAQGDWVTVM IPNSDPEMKL
MQPKRIRLHI SGILQLSGQL DHGLALIPLA DAQQYLDMGQ SVTGIAIKAN DVFSANKLVR
DAGLVTKSYV TIRSWIGTYG YMYRDIQMVR TIMYLAMILV IGVACFNIVS TLVMAVKDKS
SDIAVLRTLG ASDGLIRAIF VWYGLLAGLL GSVIGAVVGV IATLQLTPII HGIEALIGHK
LLSGDIYFID FLPSELHLMD VFIVLGTSLV LSLIASWYPA RRASRIDPAR VLSGQ
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