| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2436 |
|---|
| Symbol | |
|---|
| ID | 8133382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2794102 |
|---|
| End bp | 2795325 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644865718 |
|---|
| Product | Radical SAM domain protein |
|---|
| Protein accession | YP_003018003 |
|---|
| Protein GI | 253688813 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0641] Arylsulfatase regulator (Fe-S oxidoreductase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.755106 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATGA AAATACAGAA TTTTCAATTG ATGGCAAAAC CTTCAGGTTC AGTATGTAAC
ATTGACTGCT CGTATTGCTT TTATCTGGAG AAAGAGCACC TCTATCCAGA ACGAAAAAGT
CACTGGAAAA TGGACAACAC GACCCTAGAA AATTACGTCA GAAAAAATAT CACGGGGCAA
AAAGCAGATG TCGTTGATTT TCTCTGGCAA GGCGGAGAAC CTACGCTGTT GGGTATCGAT
TTTTTCCGCG AGGCAGTTCG GCTGCAAAAT CTCTATCGCG GCAATAAACA AATAAATAAC
TACTTCCAAA CCAATGGGAC AAACATTAAT GATGACTGGG CGCGCTTCTT AAAAGAGAAC
AACTTTCTGG TCGGTTTATC TATTGACGGC GATCGTATCA GTAATGATTC ACATCGCCTG
ACACGGTCAG GAAAAAGTAC CTTTGATGAT GTGATAAAAG GTTTAGAAGC ATTGCAACGC
CGCCATGTCG AATTTAATAC GTTAACCGTC GTCAATTCAG AAAATGTCAG ACGTCCGCTC
GACGTCTATC GCTTTTTAAA ACGTATCGGC AGCCGCTATA TGCAATTTAT TCCATTGGTA
GAGAGACGTG CTTCACAGCC CGATGCTAAT GGGTTGACGC TGATTCAACC TGATTTTTCC
GGCCAATGTA GCGTCGAATC CTGGTCCGTC CCGTCGACTG CCTGGGGACG TTTTCTTAAT
ACCATTTTTG ATGAATGGGT GCAGAAAGAT CTTGGTACCG TTTTTGTTAT GAATTTTGAG
CAAACAATGG CAAAAATGAC TGGTATGCCA AGCGCTTGCG TCATCAACGA AGTATGTGGC
GGAAATTTGA TTGTGGAATC GAACGGCGAT ATTTATTCCT GCGATCATTT CGTTTATCCA
GAAAATAAAC TGGGAAATGT GAACGATGAT GATCTGCTGA CACTCGTCAA TTCCCCCCAG
AATATCGCCT TCGGCGAAAA AAAATTGACC AACATCAGTA AAGACTGTCT CAATTGCCCA
GTTAAACCAG TATGCAATGG CGGCTGCCCC AAGCATCGTT TCGAGTTATC CAGTGATGGT
CGGCCAAATA AACATTATTT ATGCAACGGC TTTTCCACTC ATCTCACTCA CGTATTGCCA
AAAATGAAAA CAATACTAGA AATGCTGAAT CATCGTGCAA CACCAACAAA AATGCGTAAA
ACAATAAAAT CAATGCATTA CTAA
|
|---|
| Protein sequence | MSMKIQNFQL MAKPSGSVCN IDCSYCFYLE KEHLYPERKS HWKMDNTTLE NYVRKNITGQ
KADVVDFLWQ GGEPTLLGID FFREAVRLQN LYRGNKQINN YFQTNGTNIN DDWARFLKEN
NFLVGLSIDG DRISNDSHRL TRSGKSTFDD VIKGLEALQR RHVEFNTLTV VNSENVRRPL
DVYRFLKRIG SRYMQFIPLV ERRASQPDAN GLTLIQPDFS GQCSVESWSV PSTAWGRFLN
TIFDEWVQKD LGTVFVMNFE QTMAKMTGMP SACVINEVCG GNLIVESNGD IYSCDHFVYP
ENKLGNVNDD DLLTLVNSPQ NIAFGEKKLT NISKDCLNCP VKPVCNGGCP KHRFELSSDG
RPNKHYLCNG FSTHLTHVLP KMKTILEMLN HRATPTKMRK TIKSMHY
|
|---|
| |