Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2415 |
Symbol | |
ID | 8133361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2774983 |
End bp | 2775585 |
Gene Length | 603 bp |
Protein Length | 200 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644865697 |
Product | cytochrome c-type protein NapC |
Protein accession | YP_003017982 |
Protein GI | 253688792 |
COG category | [C] Energy production and conversion |
COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
TIGRFAM ID | [TIGR02161] periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAGC CAGGAAAAGT GGGACGGTTG TTGCGCCAGC TATGGCAATG GTGGCGCCGC CCGAGTCGGC TGGCGCTGGG AACATTGCTC ATTATCGGCT TCGCAGGCGG TATTTTCTTT CTGGCGACGT CCCAGAAAGG CATGGAAATG AGCAACAGCG AAGCGTTCTG CATCAGCTGT CATGAAATGC GTAATACCGT CTATCAGGAA TATATGGAAA CCGCGCACTA CAGCAACCGC AGCGGCGTAC GCGCCACCTG TCCCGATTGC CACGTTCCGC ATGAGTTTGT GCCGAAAATG GTACGTAAGA TTCAGGCCAG TAAAGAGCTG TACGGCAAAA TAATGGGCAC GATTGATACG CCACAAAAAT TTGAAGCACA CCGGCTGACG ATGGCGCAGA ACGAATGGCG GCGCATGAAA AACAACAATT CTCAGGAATG CCGCAACTGC CACAACTTTG ACTATATGGA CTTCTCAGGG CAAAAAACGG TCGCGGCGGA AAAACACAGC GAAGCGATAA AACTCGGTCA AACCTGTATC GACTGCCATA AAGGCATCGC CCACAAACTG CCGGACATGC ACGGCGTCAA AAGCGGGTTA TAA
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Protein sequence | MKQPGKVGRL LRQLWQWWRR PSRLALGTLL IIGFAGGIFF LATSQKGMEM SNSEAFCISC HEMRNTVYQE YMETAHYSNR SGVRATCPDC HVPHEFVPKM VRKIQASKEL YGKIMGTIDT PQKFEAHRLT MAQNEWRRMK NNNSQECRNC HNFDYMDFSG QKTVAAEKHS EAIKLGQTCI DCHKGIAHKL PDMHGVKSGL
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