| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2397 |
|---|
| Symbol | |
|---|
| ID | 8133342 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2756713 |
|---|
| End bp | 2757519 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644865678 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003017964 |
|---|
| Protein GI | 253688774 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTA TCGAAATCGA TAACATTTGG CAGGAATACG GCGACCACGT GGTGCTGGAA
CGGCTTAACC TGAACGTTGA GGAAGGGGCG TTCTGCACGA TGGTCGGGGC ATCCGGCTGC
GGTAAATCCA CCTTTCTGCG CCTGCTACTG GGACAGGAAA CGCCCAGCCG TGGCGAAGTT
CGGCTTGAAG GGAAGCCGCT GCCCGCAGAA CCGGATGCCA GCCGCGGCGT GGTGTTTCAG
CGCTATTCGG TTTTCCCACA TTTGACCGTG CTGGAAAACG TGGTGATAGG GTTGGAAATC
CCGCGTTCCC CCTGGCTTGG CAGGTTATTC GGGCAGCATA AGCAAGCGGC AAGAGATCGC
GCCGCGCGGA TGCTGGAGCG CGTCGGGCTT GGACACGCCA TGCATAAATA CCCCAACCAG
CTTTCCGGCG GCATGCAGCA ACGGCTTGCG ATTGCACAGG CGTTTATTGT CCAGCCTCGC
ATCCTGCTGC TCGATGAGCC GTTTGGCGCG CTGGATCCCG GTATTCGCGG CGATATGCAC
ACGCTGCTGT TGGAGCTGTG GCGGGAAACC CGCTTAACGG TTTTTATGGT CACCCACGAT
TTGCCGGAAG GTTTCCACCT CGGTACGCGT TTGCTGGTGT TCGACAAAGT CCGTGTCGAT
CCGCATGCGC CAGAAGCCTA TGGTGCACGT ATTACCTATG ACATCCCGCT AAATCAGGAG
CGTCTCGCTA CGCGCCAGCG TGCGCTTACG CCGGTGCCTC CCGTGGTCAG TGCGGCGATA
TCCCCCCCTT TAAGGAGCTT TCTGTGA
|
|---|
| Protein sequence | MSFIEIDNIW QEYGDHVVLE RLNLNVEEGA FCTMVGASGC GKSTFLRLLL GQETPSRGEV
RLEGKPLPAE PDASRGVVFQ RYSVFPHLTV LENVVIGLEI PRSPWLGRLF GQHKQAARDR
AARMLERVGL GHAMHKYPNQ LSGGMQQRLA IAQAFIVQPR ILLLDEPFGA LDPGIRGDMH
TLLLELWRET RLTVFMVTHD LPEGFHLGTR LLVFDKVRVD PHAPEAYGAR ITYDIPLNQE
RLATRQRALT PVPPVVSAAI SPPLRSFL
|
|---|
| |