Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2391 |
Symbol | |
ID | 8133335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2749155 |
End bp | 2750528 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644865671 |
Product | multidrug efflux protein |
Protein accession | YP_003017958 |
Protein GI | 253688768 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.346064 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAACAGT ATCTGACAGA AGCGCGTAAA TTATCGGCGC TTGCTGTTCC TGTCATTATT GCGCAAGTGT CTCAAACGTC GATGGGTGTG GTTGATACCG TCATGGCCGG TGCCTATAGC GCCACCGATA TGGCCGCCGT CGCCGTGGGA ACCTCTATCT GGCTACCCGC CATTCTTTTT GGTCACGGTC TGCTGTTGGC ACTGACGCCC GTTGTCGCAC AGCTCAACGG TTCCGGTCGA CGCGATCGCA TCTCGCATCA GGTACGACAA TCCTTTTTTC TGGCCGCCAT TATTTCCGTA TTTACCATGC TGGCGCTGTA TCAAGGGGAA TATGCCATCA ATCTGATGAG CGACGATTCG CCAGAACTGG CCGCGAAGGC TATCGGTTAC CTGCATGCGC TACTGTGGGG CGTACCCGGC TATCTGTTCT ATCAGGTTTT ACGCTGCCAG TGCGAAGGGC TGTCCAAAAC CTACCCCGGC ATGATGATTG GGTTCATCGG GTTGTTAATC AACATTCCGA TTAACTATGT CTTTATCCAC GGCAAATTTG GTATGCCCGA ACTGGGCGGC GTAGGCTGCG GCGTCGCGAC CGCGTCGGTT TACTGGATCA TGATGCTGTT GATGATGTTC TATACCCGGC ACGCCTCCTG GCTACGCGAT ATCCGCCTGC ATCGCCCTGC ATTCCGTCTG GACGGTGCCG TGCTAAAACG CCTCTTTGGT CTCGGTTTAC CCATCGCGTT GGCGCTGCTT TTTGAAGTCA CGTTGTTTGC CGTGGTGGCA CTATTGGTGT TGCCGCTGGG CGTCGTCGAT GTGGCTGGTC ACCAGATTGC CCTGAACTTC AGTTCGCTGA TGTTCGTCCT TCCGCTCTCG GTTGGCGTTG CCACTACCAT TCGCGTCGGG CATCGCTTAG GCGAAGGTTC GGTTGAGCAC GCCCGCATTG CCGCGCACAC AGGCATTATG GCCGGCGTGG CGTTAGCCAG CTGTACAGCC ATTTTCACCA CGCTACTGCG TGAACCTATC GCCCTGCTCT ACAATCAGGA CCCGCTGGTT GTCGCGATGG CGTCTCAGCT CATGCTGCTG GCTGCCGTTT ATCAAATCTC CGATGCCGTT CAGGCCATCG GCAGTGGCGT GTTACGCGGC TATAAAGATA CCCGGTCGAT TTTCTATATT ACGTTCACCG CTTACTGGGT GCTGGGATTG CCGAGCGGCT ACCTGCTGGC GTTGACGGAT ATCATCGTCC CACGCATGGG GCCGGCGGGT TTCTGGTGTG GTTTCATCAT TGGCCTGACG GCAGCAGCAG TGATGATGGT GACGCGGATT CGTTTTCTCC AGCGCCAGCC TGCCGCACGG ATTTTAGCGC GCGCCGCCCG CTAG
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Protein sequence | MQQYLTEARK LSALAVPVII AQVSQTSMGV VDTVMAGAYS ATDMAAVAVG TSIWLPAILF GHGLLLALTP VVAQLNGSGR RDRISHQVRQ SFFLAAIISV FTMLALYQGE YAINLMSDDS PELAAKAIGY LHALLWGVPG YLFYQVLRCQ CEGLSKTYPG MMIGFIGLLI NIPINYVFIH GKFGMPELGG VGCGVATASV YWIMMLLMMF YTRHASWLRD IRLHRPAFRL DGAVLKRLFG LGLPIALALL FEVTLFAVVA LLVLPLGVVD VAGHQIALNF SSLMFVLPLS VGVATTIRVG HRLGEGSVEH ARIAAHTGIM AGVALASCTA IFTTLLREPI ALLYNQDPLV VAMASQLMLL AAVYQISDAV QAIGSGVLRG YKDTRSIFYI TFTAYWVLGL PSGYLLALTD IIVPRMGPAG FWCGFIIGLT AAAVMMVTRI RFLQRQPAAR ILARAAR
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