Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2387 |
Symbol | |
ID | 8133331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2744389 |
End bp | 2745240 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644865667 |
Product | NLP/P60 protein |
Protein accession | YP_003017954 |
Protein GI | 253688764 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.05451 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCTTAT TTATTACTCT TTTTATATTA TTTTTCAGTA ATCTATCCCT GAACGTCGTT CAGGCTGCGC CGCATACCCC GCATTCTGCG CCGAAGAAAA GCGCCGTTGA AGAAACCAAC AAGAAAAGCC GTCAAACAAA GGGTAATGCT AAATCACCGA CACCGATCAA AAGCAAAAAA CCAGAACCTA CCGCCGCCAG CACGAAAACC AAGCCCCGTA GCGCGAACAA ATCAACAGAG AAAAAGCCAT CCCGGACGCA AAGCAGCACG CCCGCGCTAG TGAAAAAAAA CCTCAAAAAG CTGAAACCTG AAGAAGAGAA GCAGACGACC GCACAGGTCA GAGTCAAAAC CGGGCTGAAA AAGACAGTGC TCAAGGGAAA GGTAGATAAA AACCCGTCAC CCACGGAAAA AGGAATGGCG CTGAGCGCGG CACATAAAAA GCGTTATCAG CATGCCAAAA CGACAGCAAT GAATAAGTTG ATGAGCCAGA TAGGTAAGCC TTATCACTGG GGCGGTTCAT CACCCTTTAC TGGATTCGAC TGCAGCGGGC TGGTCTATTA CGCATACAAA GATGTCGTTA AGATTCAAAT TCCGCGCACC GCTAACGAAA TGTATCATCT GCGTGACGCC GCTCCGATTA AAAAGAGCGA ACTGGAAAGC GGCGATTTGG TGTTCTTCCG CATCAATAAT CGTGGCGCAG CCGATCACGT CGGAGTTTAT CTGGGAGAAG GGAAATTTAT TCAGTCGCCG CGTACCGGTT CAGATATTCG TATCAGCAAG CTGAGTGAAG ATTACTGGCA GGAGCACTAC GTGGGCGCGC GTCGCGTGGT CACACCGCAG ACAATTCGTT AA
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Protein sequence | MRLFITLFIL FFSNLSLNVV QAAPHTPHSA PKKSAVEETN KKSRQTKGNA KSPTPIKSKK PEPTAASTKT KPRSANKSTE KKPSRTQSST PALVKKNLKK LKPEEEKQTT AQVRVKTGLK KTVLKGKVDK NPSPTEKGMA LSAAHKKRYQ HAKTTAMNKL MSQIGKPYHW GGSSPFTGFD CSGLVYYAYK DVVKIQIPRT ANEMYHLRDA APIKKSELES GDLVFFRINN RGAADHVGVY LGEGKFIQSP RTGSDIRISK LSEDYWQEHY VGARRVVTPQ TIR
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