Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2382 |
Symbol | |
ID | 8133326 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2741165 |
End bp | 2741602 |
Gene Length | 438 bp |
Protein Length | 145 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644865662 |
Product | transcriptional regulator SlyA |
Protein accession | YP_003017949 |
Protein GI | 253688759 |
COG category | [K] Transcription |
COG ID | [COG1846] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00066282 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATTGC CATTAGGATC TGATTTAGCC CGTCTGGTGC GCGTGTGGCG TGCGCTGGTC GATCATCGAT TAAAACCACT TGAACTGACT CAGACGCATT GGGTTACGCT GCATAACATA TACCATCTAC CCCCTGGTCA GTCGCAGATT CAGCTGGCCA AAGCGATAGG TATTGAGCAA CCCTCATTAG TCCGAACACT GGATCAGCTT GAGGAGAAAG GGTTAATCAC TCGCCACGTT TGTGCGCACG ATCGTCGGGC AAAACGTATT ATGCTGACCG AATCAGCAGA GCCGATTATA CAGGCAGTCA ATGGCGTAAT TAGCCATACA CGTAATGAAG TATTATTTGG AATTACGCCG GAGCAGGTTG ATGAATTAGC GCTGCTGGTT GCACGCCTTG AGAAAAATAT ATTGGCATTA CATGAAAATC AAGCGTAG
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Protein sequence | MELPLGSDLA RLVRVWRALV DHRLKPLELT QTHWVTLHNI YHLPPGQSQI QLAKAIGIEQ PSLVRTLDQL EEKGLITRHV CAHDRRAKRI MLTESAEPII QAVNGVISHT RNEVLFGITP EQVDELALLV ARLEKNILAL HENQA
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