Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2378 |
Symbol | |
ID | 8133322 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2737899 |
End bp | 2738582 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644865658 |
Product | pyridoxamine 5'-phosphate oxidase |
Protein accession | YP_003017945 |
Protein GI | 253688755 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0259] Pyridoxamine-phosphate oxidase |
TIGRFAM ID | [TIGR00558] pyridoxamine-phosphate oxidase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.25247 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTCAGG AACGCACGCC CTCTGACAGT ACTCCTCTTC TTCAACCCGC CGATATTGCC GACATTCGCC GTGAATACGC ACGTGGCGGG CTTCGTCGTA GCGATCTTCC CGCTAACCCA CTGGATTTAT TTGAACTCTG GTTGAAGCAG GCCTGTGACG CGAAGCTGGT CGATCCTACC GCAATGTCCG TCGCGACCGT TGATGAGCAT GGGCAACCTT ACCAGCGCAT CGTTCTGCTT AAGCACTATG ACGAGAAAGG CATGGTGTTT TATACCAATA TGGGCAGTCG CAAAGCCCGT CATCTGGAAA ACAACCCACG TATCAGCCTG TTGTTCCCTT GGCATATGCT GGAACGCCAG GTGATGGTTC TGGGTCGCGT AGAGAAGCTC CCCACGCTTG AGGTGCTGAA ATATTTCCAC AGTCGCCCGA AAGACAGTCA GATTGGCGCG TGGGTATCCA AGCAGTCCAG CCGGATTTCA GCGCGCGGTG TGTTGGAAAG CAAATTTTTG GAATTGAAGC AAAAATTCCA GAATGGCGAG GTGCCTTTGC CGAGTTTCTG GGGAGGCTTC CGCGTCGTTA TCGATTCTGT CGAATTTTGG CAGGGCGGAG AACACCGCTT GCACGATCGA TTTTTCTACC AGCGACAGGA AGAAGGCTGG CAGATTGATC GTTTAGCGCC TTAA
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Protein sequence | MTQERTPSDS TPLLQPADIA DIRREYARGG LRRSDLPANP LDLFELWLKQ ACDAKLVDPT AMSVATVDEH GQPYQRIVLL KHYDEKGMVF YTNMGSRKAR HLENNPRISL LFPWHMLERQ VMVLGRVEKL PTLEVLKYFH SRPKDSQIGA WVSKQSSRIS ARGVLESKFL ELKQKFQNGE VPLPSFWGGF RVVIDSVEFW QGGEHRLHDR FFYQRQEEGW QIDRLAP
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