| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2361 |
|---|
| Symbol | |
|---|
| ID | 8133305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2717863 |
|---|
| End bp | 2719926 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644865641 |
|---|
| Product | carbon starvation protein CstA |
|---|
| Protein accession | YP_003017928 |
|---|
| Protein GI | 253688738 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.13571 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACG TAAAGAGCAT TGTGATCTGG CTGCTAGTCG GCCTGGCGGG CGCCTTTGCG
TTCGCCACGC TGGCACTGAG CCGCGGTGAA CACGTCAATG CCGTGTGGTT AGTCGTCGCT
GCTGTATCGT GTTACAGCAT TGCCTATCGC TTTTACAGCC TGTTTATCGC CAAAAAAGTT
TTTGAGCTCG ACGATCGCCG CCTGACACCG GCGGAGCGTC ATAACGACGG TCTGGATTAC
GTTCCCACCA ATAAATGGGT CCTGTTCGGC CACCACTTCG CCGCCATCGC CGGTGCCGGA
CCGCTGGTCG GGCCGATCCT CGCCGCACAG ATGGGCTTCC TCCCCGGCAC GATCTGGATT
CTGGTCGGCG TTATGCTGGC AGGCGCCGTG CAGGACTTCC TGGTTCTGTT TATCTCAACC
CGCCGGGATG GTCGTTCTTT GGGTGAGATG GCGAAGCAGG AACTCGGGGC ATTCGCGGGT
ATCATCACCA TGCTCGGTGC GTTGGGCGTG ATGATCATCA TTCTCTCAGC ATTGGCGCTG
GTCGTCGTTA AGGCGCTGGC TGAAAGCCCG TGGGGGCTGT TCACCATCGC CGCCACCATC
CCTATCGCGC TCTTTATGGG CGTTTACATG CGCTTTTTAC GTCCGGGTAA AATCGCGGAA
GTGTCTATCA TCGGTTTTGT GCTGATGATG CTGGCGATTG TGTATGGCGG TAACATTGCC
GCACACCCCT ACTGGGGGCC GTTCTTCACG CTGAAAGGCA CGTCGCTCAC CTGGATTCTG
GTGATCTACG GCTTCATCGC CTCCGTATTG CCGGTCTGGC TGCTGCTGGC GCCGCGTGAT
TACCTTTCCA CCTTCCTGAA AATCGGGGTC ATTATCGGTC TGGCCTTCGG TATCGTGTTC
GCGATGCCGG AAATGAAAAT GCCCGCCGTT TCCCGCTTTA TTGACGGCAC CGGCCCGGTC
TTCTCCGGTA CGCTGTTCCC CTTCCTGTTT ATTACCATCG CCTGTGGCGC GATTTCGGGC
TTCCATGCGC TGGTTTCCAG CGGCACTACG CCGAAGCTGG TTGAACGTGA AAGCCACATC
CGTTTCATTG GCTATGGCGC CATGCTGATG GAATCCTTCG TCGCCATCAT GGCGCTGATT
TGTGCCTCGG TCATCGAACC GGGCATCTAC TTCGCCATGA ACTCACCTGC CGCGCTGATC
GGCACCACGG TTGAGAGCGC TTCGCAGGCC ATCAATAGCT GGGGATTTGT GATTACCCCG
CAGGAGTTGA GCGCGATTGC CAATGACGTT GGCGAAGCCT CTATTCTTTC CCGCGCTGGC
GGTGCACCAA CCTTCGCAGT GGGCATGGCC TACATCATCA CCGAGATCTT TAACAGCCGG
GCGATGATGG CATTCTGGTA TCACTTCGCG ATTCTGTTTG AAGCCCTGTT CATTCTGACC
GCAGTAGATG CCGGGACGCG CGCCTGTCGC TTCATGGTGC AAGATCTGGT CGGTATTGCA
ATTCCCAGAC TGGCCAATAG CCACTCCTGG TTGGGGAACC TGGCCGGTAC AACCGTCGCC
GTTTCCGGTT GGGGATTCTT CGTGTATCAG GGTGTCATCG ACCCACTTGG AGGAATCAAT
ACGCTCTGGC CGTTGTTCGG TATCGGTAAC CAAATGCTGG CTTCAATGGC GTTAATTCTC
GGTACCGTGG TGTTGTTCAA GATGAAGAAA CAGCGCTATG CGTGGGTGAC GATCGTCCCT
ACCGTGTGGC TGTTTATTAC GTCGATGACA GCAGGCTGGC AAAAAATCTT CCATGAAAAA
CCTAGCATCG GTTTTCTGGC ACAGGCGAAA CGCTTCGCGG CGGGCATTGA GCAAAACACG
CTGATCGCCC CGGCCAAATC GATTAAAGAC ATGGAAACTA TCGTCTTCAG TAACCAGATC
AACGCCGCGC TGTGCGGGTT CTTCATGCTG GTAGCGGTGA CGATGCTGGT TTCCGCATTC
TTCGTCATTC GTCGTGCACT GAACAGCGAT GTCCCAACGG CAAAAGAGAC GCCAGTTGTA
TTACGGGACG GCGTGCAACC TTAA
|
|---|
| Protein sequence | MSNVKSIVIW LLVGLAGAFA FATLALSRGE HVNAVWLVVA AVSCYSIAYR FYSLFIAKKV
FELDDRRLTP AERHNDGLDY VPTNKWVLFG HHFAAIAGAG PLVGPILAAQ MGFLPGTIWI
LVGVMLAGAV QDFLVLFIST RRDGRSLGEM AKQELGAFAG IITMLGALGV MIIILSALAL
VVVKALAESP WGLFTIAATI PIALFMGVYM RFLRPGKIAE VSIIGFVLMM LAIVYGGNIA
AHPYWGPFFT LKGTSLTWIL VIYGFIASVL PVWLLLAPRD YLSTFLKIGV IIGLAFGIVF
AMPEMKMPAV SRFIDGTGPV FSGTLFPFLF ITIACGAISG FHALVSSGTT PKLVERESHI
RFIGYGAMLM ESFVAIMALI CASVIEPGIY FAMNSPAALI GTTVESASQA INSWGFVITP
QELSAIANDV GEASILSRAG GAPTFAVGMA YIITEIFNSR AMMAFWYHFA ILFEALFILT
AVDAGTRACR FMVQDLVGIA IPRLANSHSW LGNLAGTTVA VSGWGFFVYQ GVIDPLGGIN
TLWPLFGIGN QMLASMALIL GTVVLFKMKK QRYAWVTIVP TVWLFITSMT AGWQKIFHEK
PSIGFLAQAK RFAAGIEQNT LIAPAKSIKD METIVFSNQI NAALCGFFML VAVTMLVSAF
FVIRRALNSD VPTAKETPVV LRDGVQP
|
|---|
| |