Gene PC1_2357 details

Gene Information

• Locus tag: PC1_2357
• ID: 8133301
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 2712676
• End bp: 2714610
• Gene Length: 1935 bp
• Protein Length: 644 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644865637
• Product: exoribonuclease II
• Protein accession: YP_003017924
• Protein GI: 253688734
• COG category: [K] Transcription
• COG ID: [COG4776] Exoribonuclease II
• TIGRFAM ID: [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases; [TIGR02062] exoribonuclease II

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.804019
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTCAAG ATAATCCGCT GCTTGCACAG CTAAAACAGC AACTTCACTC TCAGACACCG 
CGTGTTGAAG GTGTCGTCAA AGGCACCGAT AAAGGATTTG GCTTTCTTGA AGCTGACGGA 
CAAAAAAGCT ATTTCATTCC CCCTCCACAT ATGAAAAAAG TGATGCACGG TGACCGGATT 
ACCGCCACCC TGCATACGGA AAAAGATCGG GAAATTGTCG AACCTGAAAC GCTTATCGAA 
CCCTTCCTAA CCCGATTTGT TGGCCGCATT CATAAAAAAG ACGATCGTTT ATCCATTACG 
CCTGATCATC CACTGCTAAA AGATGCGATT CCCTGCCGTG CTGCACGCGA TGTGACGCAC 
ACTTTTCAGG AAGGCGATTG GGCGGTGGCA GAAATGCGCC GTCACCCGCT GAAAGGCGAC 
CGTGGATTTC ATGCTGAACT GACGCAATAC ATTACTACGG GCGACGACCC GCTGGTGCCG 
TGGTGGGTGA CGTTGTCACG TCATAATCTG GAGCGTGCTG CACCGGACGT GGAAGCAACG 
GAGCGCCATG ACGGTGAACT CGTCCGCGAA GATCTGACCG CGCTGAGCTT TGTCACTATC 
GACAGCGCCA GCACTGAAGA TATGGACGAT GCACTGTACG TACAGGACAA CGGCGATGGT 
TCTCTACAAT TAACTATCGC GATTGCCGAT CCGACCGCCT ATGTCGACGC GGGTAGTGAG 
CTGGACAAGA TTGCACGCCA GCGCGCCTTC ACCAACTATC TGCCCGGCTT CAACATCCCG 
ATGCTGCCGC GCTCGCTGTC CGATGATATC TGTTCACTGC GCCCGGACGA GCGCCGTCCT 
GTCCTCGCCT GCCGTGTGAC GATTGCTGCC GATGGTGCGC TGGGTGACGA TATTCACTTC 
TTTGCCGCCT GGATCGAATC CAAAGCCAAG CTAGCGTATG ACAATGTCTC CGACTGGCTG 
GAAGAACAAG GCGAATGGCA GCCGCAAAAT GACGCGATTG CTGAACAAAT CCGTTTGCTG 
CACCGCGTCT GTCTGGCTCG CAGCGAATGG CGCACTACCC ATGCATTGGT ATTTAAAGAT 
CGTCCTGATT ACCGCTTCCT GCTGGGTGAA AAAGGCGATG TATTGGATAT CGTGGTTGAA 
CACCGCCGCA TCGCCAACCG TATCGTTGAA GAAGCCATGA TTGCCGCCAA CGTCTGTGCG 
GCCATTGTGC TGCGCGATAA GCTGGGCTTT GGTATCTATA ACGTCCATAA CGGCTTCGAT 
CCGGTATCGA TTGATCAGGC CGTTACCGTG TTGGACACCC ACGGTGTTCA AGCCGACGCA 
CAGACGCTGT TGACGCTGGA AGGGTTCTGT AAGCTGCGTC GTGAGCTGGA TGCCCAACCG 
ACACAGTTCC TGGATAGCCG TATTCGCCGC TTCCAGTCTT TCGCGGAAGT CAGCATCACA 
CCGGGGCCGC ACTTTGGTCT GGGGCTGGAA GCCTATGCCA CCTGGACATC CCCTATCCGT 
AAATACGGCG ATATGGTGAA CCACCGTTTG CTGAAAGCGG TTATCACCGG ACAGGCAGCG 
GAAAAACCGC AGGACGATGT TACGGTACAG TTGGCAGAAC GCCGTCGCCT TAACCGTATG 
GCCGAGCGTG ATGTCGGCGA TTGGCTGTAC GCCCGCTACC TCAGCGACAA AGCGGGTACC 
GATGTGCGTT TCAACGCGGA AATCATTGAT GTCACACGCG GCGGCCTGCG TGTCCGCCTG 
CTGGATAACG GCGCAGTCGC ATTTATCCCA TCCTCCTTTA TCCACGCCGT GCGCGATGAG 
CTGGTGTGTA GCCAGGAAAT GGGCACCCTC GCGGTGAAAG GCGATGTGGT TTATCGTCAG 
GGTGATACGC TGGACGTCGT CATCGCGGAA GTTCGTCTGG AAACCCGCAG CGTCGTGGCA 
AAGCCAGCCG CATAA 

 

Protein sequence

MFQDNPLLAQ LKQQLHSQTP RVEGVVKGTD KGFGFLEADG QKSYFIPPPH MKKVMHGDRI 
TATLHTEKDR EIVEPETLIE PFLTRFVGRI HKKDDRLSIT PDHPLLKDAI PCRAARDVTH 
TFQEGDWAVA EMRRHPLKGD RGFHAELTQY ITTGDDPLVP WWVTLSRHNL ERAAPDVEAT 
ERHDGELVRE DLTALSFVTI DSASTEDMDD ALYVQDNGDG SLQLTIAIAD PTAYVDAGSE 
LDKIARQRAF TNYLPGFNIP MLPRSLSDDI CSLRPDERRP VLACRVTIAA DGALGDDIHF 
FAAWIESKAK LAYDNVSDWL EEQGEWQPQN DAIAEQIRLL HRVCLARSEW RTTHALVFKD 
RPDYRFLLGE KGDVLDIVVE HRRIANRIVE EAMIAANVCA AIVLRDKLGF GIYNVHNGFD 
PVSIDQAVTV LDTHGVQADA QTLLTLEGFC KLRRELDAQP TQFLDSRIRR FQSFAEVSIT 
PGPHFGLGLE AYATWTSPIR KYGDMVNHRL LKAVITGQAA EKPQDDVTVQ LAERRRLNRM 
AERDVGDWLY ARYLSDKAGT DVRFNAEIID VTRGGLRVRL LDNGAVAFIP SSFIHAVRDE 
LVCSQEMGTL AVKGDVVYRQ GDTLDVVIAE VRLETRSVVA KPAA