| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2356 |
|---|
| Symbol | |
|---|
| ID | 8133300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2710127 |
|---|
| End bp | 2712439 |
|---|
| Gene Length | 2313 bp |
|---|
| Protein Length | 770 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644865636 |
|---|
| Product | oxidoreductase alpha (molybdopterin) subunit |
|---|
| Protein accession | YP_003017923 |
|---|
| Protein GI | 253688733 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01701] oxidoreductase alpha (molybdopterin) subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTCA AACCATCCAT CAAGCCATAC CGCAATGCGG CTGGCGGCTG GGGCTCGTTG
GAAGCCACCA CGCGTTTTGT GCTCGACAGC AAGCAAGCGC TGAAAAATAT CCGAAACTTG
CTGCGGGTCA ATAAATCGAA AGGTTTTGAC TGCCCTGGCT GCGCCTGGGG TGATGACAAC
AGCAGCACGT TCAGTTTCTG CGAAAACGGC GCGAAAGCGG TAAGTTGGGA AGCGACGCGC
AAAGCGGTCG ATCTGGATTT CTTCGCCGCC CATAGCGTCA CGACGCTACG CCAGCAAAGC
GACTATTTCC TTGAGTATCA GGGGCGTTTA ACCCACCCAA TGCGCTATGA CCGCGCCAGC
GACCGCTATG TTCCCATCGA CTGGGACGCC GCGTTTGCGC TGATTGCTCA GCACATCAAT
AATATGGCTC ATCCCGATCA GGTGGAGCTT TATACGTCCG GCCGTGCCAG TAATGAAGCC
TCTTATCTGT ATCAGCTTTT TGGCCGCATG TTGGGCACCA ACAATTTCCC CGACTGCTCG
AATATGTGCC ATGAGGCCAG CGGAATCGGC CTGAAACAAA GTATCGGCGT GGGGAAAGGC
ACGATCCGGC TGGATGATTT CGAACACGCT GACGCGATTT TCGTTTTTGG CCAGAATCCC
GGCACCAATC ACCCTCGCAT GCTGCACAGC CTGCGCCACG CTGCCGATCG CGGCGCGCAC
ATCGTCTCTT TTAATACGCT ACGCGAACGC GGTCTGGAAC GTTTTGCCAA TCCGCAGAAT
CCGCTGGAGC TGCTCACGCC ACTGTCCGGC ACCATTAGTG AAACCTACCT ACAGCCTAAT
CTGGGCGGCG ATATGGCTGC CGTGCGCGGC ATGGTAAAAG CGCTGCTGGA AACACATCGC
CAGCGTCTGT CTGCCGGGGA AGCGGGTTTA TTCGATCAGG ACTTCCTGTC TACACACACC
CAGCAGGTGG ATGAATACCT CGCCGTGGTG GACGCCACCA GTTGGCAGAA AATCGAACAG
CAATCCGGCC TGAGCGAAGC GCAACTACGC TATGTGGCGG CGATTTATCA GCAGTCTCCA
CGTGTGATTT GCACCTGGGC GATGGGCATT ACCCAGCACA AGCATTCCGT CGCTACCGTG
CGGGAGATCG TCAATCTGCA ACTGCTGTTC GGGCAGTTGG GGAAACCGGG TGCAGGTCTG
TGTCCAGTTC GCGGCCACAG TAATGTGCAG GGTAACCGGA CCATGGGGAT CGATGAGAAG
CCGACAGCGG CATTTCTCGA TCGTCTGGCG GCGCATTATA ACTTCACACC GCCTTACGCC
GCAGGCCACA ACACGGTAGA AGCACTGGAA GCCATGCTGC GTGATGAGAT AAAAGTGCTC
ATCGCGCTGG GCGGTAACCT CGCCGCTGCC GCACCGGATT CAGCGCGTAC CGAAGAGGCA
CTCAGCCGCT GCGATCTGAC CGTACATATC AGTACCAAAC TCAATCGCAG CCACCTGGTT
ACTGGCAAGG TTGATGCATT GATTCTGCCG ACGCTTGGCC GAACCGATCT CGACATGCAG
GCCAGCGGCC CGCAGTTTAT TACCGTCGAA GACTCTTTCA GCATGGTGCA TGCGTCACAG
GGTGTCGGGC AGCCGCTTTC GCCGTTGCAG CGCTCGGAAA CCGCGATTGT TGCCGGGATT
GCTGATGCGG TCCTCGGTCA TGAAAAGCTT GACTGGCTGG CGCTGGCGGA CGATTACTCA
CGCATCCGCG ATCACATCGC CGCGACCATT CCCGGCTTTA CCGATTTCAA TGCCAACTGC
GACCTGCCGG GCGGATTCTA TCTCGGTAAC GCTGCCGCCG AATTGCGCTT CAATACCCTC
AACGAGAAGG CGCAATTCAG TCAGGCCAAG TTGCCCGATA CGCTGTTCCC ACAGCTACAA
GGCAGCGACG TGCCTTTTAC CCTGCAAACC CTGCGTTCAC ACGATCAGTA CAACACCACC
ATTTATGGGC TGGATGACCG CTACCGCGGC GTGTACGGGC AGCGGGAGGT CCTGTTCATG
CACCCGGATG ATATCAACGC GCTCGGCCTG GAAGATGGCG ATTTGGTCGA TATCGAAACG
CTGTGGAACG ATGGCATTAC CCGTATCGTC AACGGTTTCA AGCTGGTGAG CTACGCCATT
CCACGCGGCA ATCTGGCGGC CTACTACCCG GAAACCAACC CGCTGGTACC GTTGTCCAGC
TTCGGGGATG AAACGCACAC GCCGACCTCT AAATCGGTAC CGGTTAGTGT TCGACGCAGT
ACGCAAGCAG AGCCTCTGCT GCGTATCGCC TAA
|
|---|
| Protein sequence | MKFKPSIKPY RNAAGGWGSL EATTRFVLDS KQALKNIRNL LRVNKSKGFD CPGCAWGDDN
SSTFSFCENG AKAVSWEATR KAVDLDFFAA HSVTTLRQQS DYFLEYQGRL THPMRYDRAS
DRYVPIDWDA AFALIAQHIN NMAHPDQVEL YTSGRASNEA SYLYQLFGRM LGTNNFPDCS
NMCHEASGIG LKQSIGVGKG TIRLDDFEHA DAIFVFGQNP GTNHPRMLHS LRHAADRGAH
IVSFNTLRER GLERFANPQN PLELLTPLSG TISETYLQPN LGGDMAAVRG MVKALLETHR
QRLSAGEAGL FDQDFLSTHT QQVDEYLAVV DATSWQKIEQ QSGLSEAQLR YVAAIYQQSP
RVICTWAMGI TQHKHSVATV REIVNLQLLF GQLGKPGAGL CPVRGHSNVQ GNRTMGIDEK
PTAAFLDRLA AHYNFTPPYA AGHNTVEALE AMLRDEIKVL IALGGNLAAA APDSARTEEA
LSRCDLTVHI STKLNRSHLV TGKVDALILP TLGRTDLDMQ ASGPQFITVE DSFSMVHASQ
GVGQPLSPLQ RSETAIVAGI ADAVLGHEKL DWLALADDYS RIRDHIAATI PGFTDFNANC
DLPGGFYLGN AAAELRFNTL NEKAQFSQAK LPDTLFPQLQ GSDVPFTLQT LRSHDQYNTT
IYGLDDRYRG VYGQREVLFM HPDDINALGL EDGDLVDIET LWNDGITRIV NGFKLVSYAI
PRGNLAAYYP ETNPLVPLSS FGDETHTPTS KSVPVSVRRS TQAEPLLRIA
|
|---|
| |