| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2328 |
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| Symbol | |
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| ID | 8133272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2672334 |
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| End bp | 2674076 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644865609 |
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| Product | Polypeptide-transport-associated domain protein ShlB-type |
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| Protein accession | YP_003017896 |
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| Protein GI | 253688706 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.398356 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTACGGA ATGCGTCATT CACTGACGGG TATCAACCTG CGCGTCTCAG CCCGCTTGCG
CTATTTATTT TATTGACTAC CTCAGCAAGC AGCTGGGCGG CAGATAATAA TCTGACGCCT
CTTGCCGCAC CGGCTCGGGT GGATGAACAG CTAAATATCA ACCAGCAGGA TCGCCAGCGT
GCGATGCAGC AGCAATTAGC GCCGCAAACG CCCGATGTGC GTTTGCAGCC ACCTTCCTCA
TTCTTTACTA CGTTGCAATT TCCGCAGGAA CAACAGTGCT TTACGCTGTA TCACATCATA
CTGACCGGTA AAGAAGACTT CCCCTCCTGG CTGCGTATGC CGCTGCAACA GCTGGCCGAT
CAGGGTAAAG GTCAGTGCCT GGGCGCTCAG GGTGTCAACC TGCTGATGAG CGCACTGCAA
AACCGTCTGA TCGACCATGG CTATGTCACC GCACGCGTAA TGGCACCGCC GCAAAACCTG
AAAACCGGCA CCCTGCATAT CACCCTGATT CCGGGCAAAA CGCGCCAGAT AAAACGGACC
AAAGAGAGCG ATCGCTACGT GAGTCTCTGG AGCGCCCTGC CGGCGCGTGA AGGCGAACTG
CTGGATTTGC GTGATATTGA GCAGGGACTG GAAAACCTGC AGCGCGTGCC CACCGTACAG
GCAGAGATGG CGATTGTACC GGGCGAACAG CCCGGCGAAA GCGACATTGA CGTCACCTGG
AAACAGGAAA AAATGTGGCG TCTCGGCGCG ACGCTCGATG ACTCTGGCAC CGAAACCACC
GGTCGTTATC AGGGCGGCCT GACGCTGTAT ATCGATAACC CCTTCGCACT CAGCGACCTG
TTCTACATTT CCGGCAACCA TGACCTTGAA TCCGGCAGCG AAAAAGGCAG CAAGAACTAT
ATGCTGCACT ATTCCGTACC GTTCGGTTAC TGGATGGCGG GCGTCACCGC CAGCGGCTAC
GACTACAACC AGAATGTGGC GGGCGCGTAT GAAGACTACA ACTACAGCGG CAACAGCAAA
AACCTTAACT TCCAATTGAG CCGTGTGCTG TACCGCAGCG GCAGTCAGAA AACCTCAATG
AGCTATGAAA TTCTGACGCG CGAATCGCAG AACTTCGTCA ACGATACCGA AGTGGATGTG
CAGCGACGTA AAACCAGCGC CTGGCGTCTG GGCCTCCAGC ATCGCCACTA CTTCGGTGCC
ACCACTCTTG ATGCCGCCGT GAGCTACCAG CGCGGCACCC GCTGGTTCGG CGCTATTCCG
GCGCAGGAAG AGTATTTCGA TGAAGGCACC GCGCTGGCGA AAATTATCCA GTTGAATGCA
CAACTCGATG TGCCTTTTAC GCTGGGCAAT CAGACCTTCC GCTACAACGT GCAGTATCTG
CGCCAGATCA ACCATACCAA ACTGACGCCA CAGGATCAGC TGTCGATTGG TAACCGCTGG
ACCGTGCGCG GCTTTGATGG TGAACGCACC CTGACGGCCG ACAACGGCTG GTTCGTGCGC
AACGATCTGG CCTGGCGCAC CCCGCTTCCT AACCAGGAAA TGTATCTCGG CGCTGACTAC
GGCGAAGTAG ACGGCACGCG TGATTATCTC GCCGGGAAAC ATCTGGCGGG CGGCGTGCTT
GGTCTGCGCG GTAACGCCTT TAACACCGGC TACGACCTGT TTGTCGGTGT GCCGTTCTCC
AAACCGGAAG GTTTCCACAC CAGTCCGGTC ACCCTCGGTT TCAACCTCAG CTGGCAGTAC
TAA
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| Protein sequence | MLRNASFTDG YQPARLSPLA LFILLTTSAS SWAADNNLTP LAAPARVDEQ LNINQQDRQR
AMQQQLAPQT PDVRLQPPSS FFTTLQFPQE QQCFTLYHII LTGKEDFPSW LRMPLQQLAD
QGKGQCLGAQ GVNLLMSALQ NRLIDHGYVT ARVMAPPQNL KTGTLHITLI PGKTRQIKRT
KESDRYVSLW SALPAREGEL LDLRDIEQGL ENLQRVPTVQ AEMAIVPGEQ PGESDIDVTW
KQEKMWRLGA TLDDSGTETT GRYQGGLTLY IDNPFALSDL FYISGNHDLE SGSEKGSKNY
MLHYSVPFGY WMAGVTASGY DYNQNVAGAY EDYNYSGNSK NLNFQLSRVL YRSGSQKTSM
SYEILTRESQ NFVNDTEVDV QRRKTSAWRL GLQHRHYFGA TTLDAAVSYQ RGTRWFGAIP
AQEEYFDEGT ALAKIIQLNA QLDVPFTLGN QTFRYNVQYL RQINHTKLTP QDQLSIGNRW
TVRGFDGERT LTADNGWFVR NDLAWRTPLP NQEMYLGADY GEVDGTRDYL AGKHLAGGVL
GLRGNAFNTG YDLFVGVPFS KPEGFHTSPV TLGFNLSWQY
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