| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2288 |
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| Symbol | |
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| ID | 8133232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2630881 |
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| End bp | 2634768 |
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| Gene Length | 3888 bp |
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| Protein Length | 1295 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644865575 |
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| Product | ATP-dependent RNA helicase HrpA |
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| Protein accession | YP_003017862 |
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| Protein GI | 253688672 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.155291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATCAC CTCTCAGTGC ATTATCTACG CAGTTAAGTG AGCTAATGCT TCGCGATCGG
CAGCGTCTGC ACCGCCGCTT GCAGGGCGCC GCGAAGGTCA GCAGCCCGCA GGCTCAGGCT
GCGATCGCGC AGGAAATTGA GGGGGAGATT GTCGCGGCGC GCCAGAAAGT CGAGAATCGA
CGGGCAAGCC GTCCGGCGAT TCACTACCCT GAACAGCTTC CCGTTAGCCA GAAAAAAGAC
GAGATACTGG AAGCACTGCG TAATCATCAG GTGATTATCG TCGCGGGCGA GACGGGGTCG
GGGAAGACCA CGCAGTTACC GAAAATCTGT CTCGAACTGG GGCGTGGCGT GCACGGCCTG
ATTGGCCATA CGCAGCCGCG TCGTCTGGCG GCCAGAACCG TCGCTGACCG CATTGCTGCC
GAGCTGGAAA CGCCGCTGGG CGGCAGCGTC GGCTATAAAG TCCGCTTTAA CGATCAGGTG
AGTGACAATA CGCTGGTCAA ACTGATGACA GACGGTATCT TACTGGCTGA AATTCAGCAG
GATCGCCTGT TGATGCAGTA CGACACATTG ATCATCGATG AAGCGCACGA ACGCAGCCTG
AATATCGATT TCATCATGGG CTATTTGCGC CAGCTGTTGC CAAAGCGCCC TGATTTAAAA
GTGATTATTA CGTCGGCTAC CATCGATCCG CAGCGCTTCT CCCGCCACTT TAATAATGCC
CCGATCATTG AAGTATCCGG CCGGACCTAT CCGGTGGATG TGCGCTATCG TCCTGTGGTG
GAAGATGCCG ACGACAGCGA ACGCGATCAG CTACAGGCCA TTTTTGATGC GGTAGACGAG
CTGACGCGCG AAGGGCCGGG GGATATTCTG GTCTTCATGA GCGGTGAACG TGAAATCCGC
GATACCGCAG AAGCGCTGAC CCGTCTGGAC TTGCCGCATA CCGAAATTCT CCCGCTGTAC
GCGCGTCTGT CGAATCAAGA GCAGAACCGC GTCTTTCAGT CACATCATGG CCGCCGTATC
GTGCTGGCGA CCAACGTAGC GGAAACGTCA TTGACCGTGC CGGGGATTCG TTATGTGATC
GATCCGGGCA CGGCGCGTAT CAGCCGCTAC AGCTTCCGTA CCAAAGTCCA ACGCCTGCCG
ATTGAGCCCA TCTCACAGGC ATCGGCGAAT CAGCGTAAAG GGCGCTGTGG TCGTGTGGCC
GCCGGGGTAT GTATCCGCCT CTATTCCGAG CAGGATTTCT TGTCGCGGCC TGAATTTACC
GATCCTGAAA TTTTGCGTAC CAATCTGGCT TCCGTCATTC TGCAAATGAC GTCGCTGGGG
CTTGGCGATA TCGCTGCGTT CCCGTTTGTT GAAGCGCCGG ATAAACGCAA TATTCAGGAC
GGCGTGCGGC TGCTGGAAGA GCTAGGTGCC ATTACGTTGG CGGAAAATGG GCATTATCGC
CTGACGCCGC AGGGGCAGCA GTTGGCGCAA TTGCCGATCG ATCCACGTTT GGCGCGAATG
GTGCTGGAAG CGCGTAAAAC CGGCTGTGTG CGTGAAGTGA TGGTCATCAC TGCCGCGCTG
TCGATTCAGG ATCCGCGCGA AAGACCGCTG GATAAGAAGC AGGCATCGGA TGAGAAACAT
CGCCGTTTTG CCGATAAAGA CTCCGATTTT CTGGCTTTCG TCAATCTGTG GGACTACTTG
CGTGAGCAGC AGAAAACGCT GTCTTCCAGT CAGTTCCGCC GTCAGTGCCG CACCGATTTC
CTTAACTACC TGCGCGTGCG CGAATGGCAA GATATTTACA CGCAGCTGCG TCAGGTGGTG
AAAGAACTGG GGCTGCCGGT CAACAGCGAA CCGGCCGATT ACCTGAGTAT TCACTGCTCG
CTGCTCACCG GGCTGTTGTC GCATATCGGG CAGAAAGATA TTGAGAAACA GGAGTTCAGC
GGCGCGCGTA ACGCCCGATT TGCGATTTTC CCCGGATCGG GGCTATTCAA AAAGCCGCCT
AAGTGGACGA TGGTGGCTGA ACTGGTGGAA ACCAGCCGCC TGTGGGGACG TATTGCCGCG
CGTATTGAAC CCGAGTGGAT CGAACCGCTA GCCCAGCATC TGATTAAGCG GAGCTACAGC
GAGCCCCATT GGGAAAAAGC ACAGGGTACG GTGATGGCGC AGGAGAAGGT GACGCTTTTC
GGGCTGCCGA TTGTGGCGGC GCGCAAGGTG AACTACAGCC AAATCGATCC AACGCTGGCG
CGTGAGATGT TTATCCGCCA TGCGCTGGTG GAAGGCGACT GGCAAACGCA TCACGCCTTT
TTCCGCGCTA ACCTCAAGCT GTTGGCGGAA GTAGAAGATT TAGAGCACAA ATCGCGCCGC
CGCGACATTT TGGTGGATGA CGAGACGCTG TTTGCTTTCT ACGATCAGCG CTTGCCGCAC
GATGTCATTT CGTCGCGCCA CTTTGACAAG TGGTGGAAAG TCGCCAGCCG GGATAATGCC
GACCTGCTTA ATTTTGAAAA GAGCATGTTG ATTAAAGACG GCGCGGAGAA GGTGAGCGCG
CTGGATTATC CGAATTTCTG GCATCAGGGC AGTCTGAAAT TACGGCTGTC CTATCAGTTT
GAGCCGGGTG CGGATGCGGA TGGCGTCACG GTGCATATTC CGCTGCCCAT CCTCAATCAG
GTGCGTGAAG AGGGCTTCGA GTGGCAGATC CCCGGCGTGC GGCGCGAACT GACGATCGCG
CTGATTAAAT CCTTGCCCAA ACCATTACGC CGTAACTTTG TTCCCGCGCC GAACTACGCC
GAAGCGTTTC TGGCGCGCAC CACGCCACTA GAGAAAGGGC TATTGGATGC GCTGGAGCGT
GAGTTACGGC TCATGACGGG CGTGACGGTG CCGCGCGAAG CGTGGCAGTG GGATCAGGTG
CCCGATCATC TGAAAATCAC GTTCCGTGTC ATCGATGAGA AGAATCGGAC GCAGCGGGAA
GGCAAGGACC TGAACGCCCT GAAGGATCAG CTCAAAGATA AAGTGCAGCA GACGCTATCA
TCCGTGGCGG ATGATGGGCT GGAGCAGCGC GGTCTGCACG TCTGGAGCTT CGGTTCATTG
CCGGACTGCT ATGAGCAGAA ACGCGGCGGT TACTCGGTTA AAGCCTATCC GGCGTTGGTG
GATGAAAAGG ATAGCGTGGC AATTCGTCTG TTCGATACGC CGCACCAGCA ACAGCAGGTG
ATGCGGCAGG GACTACGTCG CCTGTTGCTG TTGAACATTC CATCGCCGAT CAAATATCTA
CATGAAAAGC TGCCAAACAA GGCGAAGCTC GGTCTCTATT TCAACCCGTA CGGCAAAGTG
TTGGATCTCA TCGATGACTG TATCGCCTGC GCGGTGGATA AACTGATTGA GACATCCGGC
GGTCCGGTCT GGCAGGAAGA AGCCTTCCAG CAACTGCATG AAAAAGTGCG TGCGGAGCTG
AACGATACGG TGGTGGATAT CGCCAAACAG GTTGAGCAAA TCCTGACAGC CGTTTTCACC
ATTAATAAAC GTCTGAAAGG GCGTGTAGAC ATGGCGATGG CGCTGGCGTT AAGCGATATC
AAGAGTCAGA TGAACAGTCT GGTGTTCCGT GGCTTTGTGA CCGAAAACGG CTGGCAGCGC
CTGCCGGACG TGCTGCGCTA TCTGCAAGCG ATAGAGCGAC GTTTGGAGAA GCTGGCACAG
GATGTCCACC GCGATCGGGC ACAAATGTTG AAAGTGGAGC AGGTTCAACA GGCGTGGCAG
CAGTGGTGGA ACAAGCTGCC AGCGGAGCGA CGTGACGATG AGGACGTGAA AGCGGTGCGC
TGGATGCTTG AAGAATTGCG CGTCAGCTAC TTTGCCCAGC AGCTCGGGAC GCCGTTCCCG
ATCTCGGATA AGCGCGTATT GCAGGCGATG GAGCAGGTCG AAGGCTAA
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| Protein sequence | MKSPLSALST QLSELMLRDR QRLHRRLQGA AKVSSPQAQA AIAQEIEGEI VAARQKVENR
RASRPAIHYP EQLPVSQKKD EILEALRNHQ VIIVAGETGS GKTTQLPKIC LELGRGVHGL
IGHTQPRRLA ARTVADRIAA ELETPLGGSV GYKVRFNDQV SDNTLVKLMT DGILLAEIQQ
DRLLMQYDTL IIDEAHERSL NIDFIMGYLR QLLPKRPDLK VIITSATIDP QRFSRHFNNA
PIIEVSGRTY PVDVRYRPVV EDADDSERDQ LQAIFDAVDE LTREGPGDIL VFMSGEREIR
DTAEALTRLD LPHTEILPLY ARLSNQEQNR VFQSHHGRRI VLATNVAETS LTVPGIRYVI
DPGTARISRY SFRTKVQRLP IEPISQASAN QRKGRCGRVA AGVCIRLYSE QDFLSRPEFT
DPEILRTNLA SVILQMTSLG LGDIAAFPFV EAPDKRNIQD GVRLLEELGA ITLAENGHYR
LTPQGQQLAQ LPIDPRLARM VLEARKTGCV REVMVITAAL SIQDPRERPL DKKQASDEKH
RRFADKDSDF LAFVNLWDYL REQQKTLSSS QFRRQCRTDF LNYLRVREWQ DIYTQLRQVV
KELGLPVNSE PADYLSIHCS LLTGLLSHIG QKDIEKQEFS GARNARFAIF PGSGLFKKPP
KWTMVAELVE TSRLWGRIAA RIEPEWIEPL AQHLIKRSYS EPHWEKAQGT VMAQEKVTLF
GLPIVAARKV NYSQIDPTLA REMFIRHALV EGDWQTHHAF FRANLKLLAE VEDLEHKSRR
RDILVDDETL FAFYDQRLPH DVISSRHFDK WWKVASRDNA DLLNFEKSML IKDGAEKVSA
LDYPNFWHQG SLKLRLSYQF EPGADADGVT VHIPLPILNQ VREEGFEWQI PGVRRELTIA
LIKSLPKPLR RNFVPAPNYA EAFLARTTPL EKGLLDALER ELRLMTGVTV PREAWQWDQV
PDHLKITFRV IDEKNRTQRE GKDLNALKDQ LKDKVQQTLS SVADDGLEQR GLHVWSFGSL
PDCYEQKRGG YSVKAYPALV DEKDSVAIRL FDTPHQQQQV MRQGLRRLLL LNIPSPIKYL
HEKLPNKAKL GLYFNPYGKV LDLIDDCIAC AVDKLIETSG GPVWQEEAFQ QLHEKVRAEL
NDTVVDIAKQ VEQILTAVFT INKRLKGRVD MAMALALSDI KSQMNSLVFR GFVTENGWQR
LPDVLRYLQA IERRLEKLAQ DVHRDRAQML KVEQVQQAWQ QWWNKLPAER RDDEDVKAVR
WMLEELRVSY FAQQLGTPFP ISDKRVLQAM EQVEG
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