Gene PC1_2271 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2271 
Symbol 
ID8133215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp2612156 
End bp2612632 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content56% 
IMG OID644865558 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_003017845 
Protein GI253688655 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGACGCGCC TATGGCGCTA TGGACTGGTG CTGTCGCGTA GCCATGAAGT TGCCGAAGAG 
CTGGTCCAGT CTACCTGCGT TCGGGCGCTC GAAAAGAGTA CGCAATTTAT ACCCGGCACG
CGTATCGACA GATGGCTGTT CTCCATTCTC CATTCAATAT GGATTTCCGA ACTGCGCGCC
CGTCGCGTGC GTCAGGGACA GGGGTTTATC GAAAGCGAAG CATTGCTGGC CCCGGATACC
CATGAGCAGG ATGACAATCG CCTGCATTAC CAGAAAATCA TGCAGCGCGT CAGCGCGCTT
CCCGAAGCAC AGCGCAACAC CGTCTTTTTA GTTTATGTCG AAGGGTTTTC CTATCAGGAA
GCGGCAGACA CGCTATCGGT GCCGATCGGC ACCATTATGA GCCGACTGGC TGCCGCACGG
GGTACGCTGG CTAAATCCAT TGATACGTTG CCCTCGGCAA AGGAGAAACT GCCTTGA
 
Protein sequence
MTRLWRYGLV LSRSHEVAEE LVQSTCVRAL EKSTQFIPGT RIDRWLFSIL HSIWISELRA 
RRVRQGQGFI ESEALLAPDT HEQDDNRLHY QKIMQRVSAL PEAQRNTVFL VYVEGFSYQE
AADTLSVPIG TIMSRLAAAR GTLAKSIDTL PSAKEKLP