Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2234 |
Symbol | |
ID | 8133178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2566316 |
End bp | 2567809 |
Gene Length | 1494 bp |
Protein Length | 497 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644865521 |
Product | transcriptional regulator, GntR family with aminotransferase domain |
Protein accession | YP_003017808 |
Protein GI | 253688618 |
COG category | [E] Amino acid transport and metabolism [K] Transcription |
COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCGCTCAC TTCTGACCGA CTTATTGCTT CAGCGTTTAG CCAACCAGCA AGACGGTGCG CTAAACAAGC GTTTGTACGA CTGCATTCGG CTAGCGATTC TTGATGGCGC GATTGCCGCT GGCGAGCGTC TGCCGTCGTC GCGCGATCTG GCGCAGCAGC TATCACTGTC ACGTAATACC GTACTGACCG CTTACGAACA GCTCCTGGCA GAAGGCTATA TTGATGCGCG CAAAGGAAGC GGGACATTCG TCACGGAACA GTTGCCCGAT GGCAATATGC AACCGGTGAG CAGCGACAGC GCCGGAGAAA TCCGTGAACC TAAACATGAA TTATCGCGTC GCGGTATGCA TCTGCTGGGT TATGCCGGTG CCTCTGCCCG CCAATGGGGC GCGTTTATGC CGGGCATCCC GGATATCGCC AGCTTTCCTC ACGATTTGTG GCGACGGATT CAGACGCGAC TGACGCGCCG CGTTCGTCCC GAACAGCTTT CCTATTCACC GATTGGTGGC TGTCCCGAAC TGCAACTCGC TCTGGTGGAT TATCTGCGCG TCGCCCGCTC TGTCGAATGC ACGCCGGAGC AAATTCTGAT TACCGAAGGC ACGCATCAGG CGATGGATCT GCTGGCTAAA ATGCTGTGCA ACCCCGGCGA TTTGGCATGG ATTGAAGATC CCTGTTACTG GGGGATTCGC AATGTTCTGA CGATTAACGG CCTGCGAGTC GCCCCCGTTG ATGTCGATGA ACAAGGGCTG GCACCGCCGG AAACGCTGGC GCCCGACGCC GTTCCACGCC TGATTTGCGT GACACCGTCA CATCAATATC CGTTGGGCGC GGTGATGAGT CTGGCACGGC GTCAACGTCT GCTGGCACTG GCGCAGGAGC ACGGTTGTTG GGTGGTGGAG GATGATTACG ATAGCGAATT CCGCTTCTCC GGCAGCCCGA TCCCCGCGCT GCAAGGGCTA CAGGCGCAAT CACCGGTGAT CTACATCGGC ACATTCAGCA AAACACTCTA CCCCGGTCTG CGTGTCAGCT ACATGGTGCT GCCTCCGCTG CTGGCGCAGT CGCTAAAGAC CGCACATTCC GAGCTCTATC GCGGCGGTCA CTGGCTCACT CAAGCGACGC TCGCGCAGTT TATCCACGAA GGCCACTACG CCGCACATAT CCGCCGTATG CGCCTGCTCT ACGCCCGACG CCGCGCGCTA TTGACGTCGT TGATTGAACA ACATCTGGGC GCGGATTACG TTGGAGACAA CAGCAACGCC GGGCTGCATA TGCTGCTCAG CCTGCCTCCT CATATCGACG ATGTCGTGCT AAGCGCGGCA ATCTTGCGCC GTGGCGTGAT GGTTAAACCC CTCTCCAGCT ACTACCTGCA ACCGACGCAA CAGCGTGGTT TATTACTGGG CTACGCCAGC GTGGAAGAGA GCCAAATGAC GAAGGCGTTT TCCGTGATTG TGGCCTGTAT TCAGGCGCTG AATACGCGCC ATTCCGACGT CTGA
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Protein sequence | MRSLLTDLLL QRLANQQDGA LNKRLYDCIR LAILDGAIAA GERLPSSRDL AQQLSLSRNT VLTAYEQLLA EGYIDARKGS GTFVTEQLPD GNMQPVSSDS AGEIREPKHE LSRRGMHLLG YAGASARQWG AFMPGIPDIA SFPHDLWRRI QTRLTRRVRP EQLSYSPIGG CPELQLALVD YLRVARSVEC TPEQILITEG THQAMDLLAK MLCNPGDLAW IEDPCYWGIR NVLTINGLRV APVDVDEQGL APPETLAPDA VPRLICVTPS HQYPLGAVMS LARRQRLLAL AQEHGCWVVE DDYDSEFRFS GSPIPALQGL QAQSPVIYIG TFSKTLYPGL RVSYMVLPPL LAQSLKTAHS ELYRGGHWLT QATLAQFIHE GHYAAHIRRM RLLYARRRAL LTSLIEQHLG ADYVGDNSNA GLHMLLSLPP HIDDVVLSAA ILRRGVMVKP LSSYYLQPTQ QRGLLLGYAS VEESQMTKAF SVIVACIQAL NTRHSDV
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