| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2215 |
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| Symbol | |
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| ID | 8133159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2544311 |
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| End bp | 2545390 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644865503 |
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| Product | type III secretion protein, YscU/HrpY family |
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| Protein accession | YP_003017790 |
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| Protein GI | 253688600 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
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| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGAGA AAACGGAACA GCCCACAGAT AAAAAGCTGG AAGACGCACG CCGTAAAGGA
GAAGTAGGAC AAAGTCAGGA TGTGCCCAAG CTGCTGATCT GCGTCGGTCT ACTGGAGTGC
GTGTTGGCAT TAGCGGACAG CACAATGGGG AAACTCCAGA CGCTGGTGCA ACTGCCGCTA
CAACGGCTGG ATGCGCCGTT TGCGCAGGTG GCGAAAGAAG TCTTTCATGA CGCCGCCGTG
CTGGCAGGCA CACTCTGCCT GTTAGCCGCC GCGATTGCCG TCTTGCTGCG CATTGTGGGC
GGCTGGATCC AATATGGCCC GCTGTTTGCG CCCGAAGCGC TGAAGCTCGA TCTCAATCGA
CTGAACCCGA TTAACCAGTT TAAGCAGATG TTTTCGATGC GTAAGCTGGT GGAAATGCTG
ACCAATATCC TGAAAGCCGT AGTGATCGGT ACGGTCTTTT ATAAAGTGGT GGTGCCGGAG
TTGGAAGCGC TGGTCGAATT GGCCTACGGC GATCTCCACG GTTTCTGGCA AGGGGTTAAA
GCGCTGCTGA CGCGCATTGC CCGCACCACG CTGACGGCGC TCTTAGTGCT ATCTGCACTG
GATTTCGGTC TGCAAAAGTA TTTCTTTCTC AAGCAGCAGC GTATGAGCCA TGAGGATTTA
CGCAACGAGC ACAAGGATTC CGAAGGCGAT CCCCACATGA AAGGCCATCG TAAGTCGCTG
GCGCACGAAC TGATGAACGA ACCCGCCGCC CCGCGCCCCA AAGCCAAAGT CGAAGACGCC
GATATGCTGC TGGTGAACCC AACGCACTAT GCGGTGGGAC TTTACTATCG TCCCGGCAAA
ACGCCATTAC CGCGCATCTT GTTTAAAGGG GAAGATAGTG CGGCGCAGGA GCTCATCGCT
CAGGCGAAAA AAGCAGACAT TCCGGTGATT CGCTTCATCT GGCTGACCCG TACGCTGTAT
CGCACCACGC CGGAAGGCCA GTACATTCCG CGCGAAACGC TTCAGGCCGT AGCGCAGGTG
TATCGCGTCC TGCGCCAGCT CGAAGACGAG CAAAAACGCG ATATTATCGA GATGGAGTGA
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| Protein sequence | MSEKTEQPTD KKLEDARRKG EVGQSQDVPK LLICVGLLEC VLALADSTMG KLQTLVQLPL
QRLDAPFAQV AKEVFHDAAV LAGTLCLLAA AIAVLLRIVG GWIQYGPLFA PEALKLDLNR
LNPINQFKQM FSMRKLVEML TNILKAVVIG TVFYKVVVPE LEALVELAYG DLHGFWQGVK
ALLTRIARTT LTALLVLSAL DFGLQKYFFL KQQRMSHEDL RNEHKDSEGD PHMKGHRKSL
AHELMNEPAA PRPKAKVEDA DMLLVNPTHY AVGLYYRPGK TPLPRILFKG EDSAAQELIA
QAKKADIPVI RFIWLTRTLY RTTPEGQYIP RETLQAVAQV YRVLRQLEDE QKRDIIEME
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