| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2200 |
|---|
| Symbol | |
|---|
| ID | 8133144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2528473 |
|---|
| End bp | 2530062 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644865488 |
|---|
| Product | EAL domain protein |
|---|
| Protein accession | YP_003017775 |
|---|
| Protein GI | 253688585 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4943] Predicted signal transduction protein containing sensor and EAL domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGCTA TGCTCACCTT AACTACCAAC ACCGGATTGT GGTTCAGACT TGTTTTGATT
TCGTTTGCCA GCGCTTTGCT GGCGCTGTTT ATTGGGCAAG GCATTTTAGC CCGGCTGGAA
CAGACGCAGT TGCAGCACTA TAGTCAGGAC GTCCTCGATC AGGGAATCGC CGTCGCGAAT
GAAGGTCGGG AAACCATCAA CCGGGTGTTG ACGCTGAATA ACGCACCTTG TTCCAGCGCC
GACCTGAAAG AGTTACGTCT GATCTCCTTT TACTCCGTTT ATCTGCGCGA TATCGGGCGT
ATCAAGGACA ACTATCTCAT CTGCTCCGCA GGCTGGGGGA TTCTCAACCC ACCGATTTAT
CTGCTGCCGC CGAACCTGAC GACGCCAGAG GGCGTGCAGC TATGGACCGC GATGAAAGAC
GTGGTTGATC CACGTATTAC CGCCGATATG GCAAGCCTGA ACGGTGTCGT CACGATTACC
GCCGCCGCCG CATTTCGCCG TTTCATTCAT CCGCCTGCCG AATACAATGC CATGCTGATA
ACGCGCAATC TGGGTCATAT CTATCAGACC TTTGGCGATA TCGATCTCTC GGCGTTCAAG
CAGACACAGC AGCAGAAGAA CGCGTGGCTG ACCATGGGAA AACGTCAGAC GTTTTTCTGT
GCGGCAAACC GGGATATCTG CGTACTGGCT CAGTTAGATT CTGCGGGTAT CCTGTATCGT
CCGTGGTATA TCATCACCGC CCTGTTTTTT GTCGGAGCAC TCATCGGCGC CAGTTTTACC
CTGTCCTATC AACTCTACGA CGATCGGCAT CAGGCTTTGC CATCACAGCT AAAACGCGCA
ATTAAACACC AGCGACTGCA TGTACATTAC CAGCCGCTCA TCAGCCTGCC ACAGCGTGCG
ATTATTGGTG TAGAAGCGCT GGCACGTTGG AAAAATGAGC GTGGTGATAA TGTCTCGCCA
GAGCTTTTTA TCGGCATTGC TGAAAAAATG GGCTACTCCG CCGAGCTCAC CCGCATCATC
ACGCGTCAGG CGCTGCGAGA CATGCAGCCG TACCTCACGC AGGAATCGCC CTTTCTTCTT
AGTATTAATC TGTCTGTGTC TGACATTGTT TCGTCTGACT ATCATCACTT CCTACAGCAG
TTGTGCGACG AACTGGGGAT AGACAGAACA CGTGTCATGT TAGAACTGAC TGAGCGGTCG
AGCACATCCC ATAAGACGCT GGCAGACGGC CTTGAGGCCT TACGCCGTTC GGGCTATAAG
GTCGCGCTTG ATGATTTCGG TACGGGATAT TCCAACCTCG ACTATCTGAG CCATTTACCG
TTCGATATGA TCAAGATCGA CAAGATTTTT GTCGGCGCCA TCGGTACCGA CTCGGTGAAT
GCCGCTATGG CAGATCTGTT ATTCACCCTG GTCAAAAAAC TGGACGTCCC TGTGATCATC
GAAGGGGTAG AAACCCGCGA GCAAGCCGCT TACATCCTGC AACATTGCCC ATCGGCGATT
ATTCAAGGAT GGTATTTCAG TCGGGCGGTG GCGTTGCACG ATCTACCGGA TATCCATCAC
TATCCGTGCC CGCCGATAGA AACGGCGTAG
|
|---|
| Protein sequence | MVAMLTLTTN TGLWFRLVLI SFASALLALF IGQGILARLE QTQLQHYSQD VLDQGIAVAN
EGRETINRVL TLNNAPCSSA DLKELRLISF YSVYLRDIGR IKDNYLICSA GWGILNPPIY
LLPPNLTTPE GVQLWTAMKD VVDPRITADM ASLNGVVTIT AAAAFRRFIH PPAEYNAMLI
TRNLGHIYQT FGDIDLSAFK QTQQQKNAWL TMGKRQTFFC AANRDICVLA QLDSAGILYR
PWYIITALFF VGALIGASFT LSYQLYDDRH QALPSQLKRA IKHQRLHVHY QPLISLPQRA
IIGVEALARW KNERGDNVSP ELFIGIAEKM GYSAELTRII TRQALRDMQP YLTQESPFLL
SINLSVSDIV SSDYHHFLQQ LCDELGIDRT RVMLELTERS STSHKTLADG LEALRRSGYK
VALDDFGTGY SNLDYLSHLP FDMIKIDKIF VGAIGTDSVN AAMADLLFTL VKKLDVPVII
EGVETREQAA YILQHCPSAI IQGWYFSRAV ALHDLPDIHH YPCPPIETA
|
|---|
| |