| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2197 |
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| Symbol | |
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| ID | 8133141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2526698 |
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| End bp | 2527465 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644865485 |
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| Product | type III secretion apparatus lipoprotein, YscJ/HrcJ family |
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| Protein accession | YP_003017772 |
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| Protein GI | 253688582 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4669] Type III secretory pathway, lipoprotein EscJ |
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| TIGRFAM ID | [TIGR02544] type III secretion apparatus lipoprotein, YscJ/HrcJ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAATCG ATAAGCGAGT GTTTCTTCTG CTGATCGGGC TATTGGCTGG CTGCGGCGAG
CCGATTGAGC TGAATCGCGG GCTGTCGGAG AACGATGCCA ACGAAGCGAT TTCGATGCTT
GGCCGTTATC AGATCGGCGC GGAGAAACGG GTGGACAAAA CCGGCGTTAC GCTGGTGATC
GACGCAAAAA ACATGGAGCG TGCCGTCAAT ATTCTCAATG CGGCGGGCTT ACCGAAGCAA
TCACGTACTA ATCTGGGCGA GGTCTTTCAG AAAAGTGGTG TGATTTCGAC GCCGTTGGAA
GAGCGCGCCC GCTATATCTA TGCCTTATCG CAGGAAGTGG AAGCAACGCT GGCGCAGATC
GATGGCGTCC TGGTGGCGCG GGTGCATGTG GTGCTACCGG AGCGTATCGC CCCCGGCGAG
CCGGTTCAGC CTGCCTCGGC AGCGGTGTTT ATCAAATATC GTGCTGAACT GGAACCTGAT
GGGATGGAGC CGCGCATCCG CCGTATGGTG GCCAGCAGTA TCCCCGGCCT GTCCGGCAAG
GATGATAAAG AACTGGCGAT CGTCTTTGTT CCGGCAGAGC CGTATCAGGA CACGATCCCT
GTTGTCACTC TGGGGCCGTT CACGCTCACG CCGGATGAAA TGCGACGCTG GCAGTGGAGT
GCGGGGCTGT TCGGCCTGCT ACTGGCTGGA CTATTAGGCT GGCGCGTTGG CATGCCTTAC
CTGCGCCAAT GGCAGCAGAA AAAAGCGGGG GAGCCGTCGT CACAATGA
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| Protein sequence | MKIDKRVFLL LIGLLAGCGE PIELNRGLSE NDANEAISML GRYQIGAEKR VDKTGVTLVI
DAKNMERAVN ILNAAGLPKQ SRTNLGEVFQ KSGVISTPLE ERARYIYALS QEVEATLAQI
DGVLVARVHV VLPERIAPGE PVQPASAAVF IKYRAELEPD GMEPRIRRMV ASSIPGLSGK
DDKELAIVFV PAEPYQDTIP VVTLGPFTLT PDEMRRWQWS AGLFGLLLAG LLGWRVGMPY
LRQWQQKKAG EPSSQ
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