| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2192 |
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| Symbol | |
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| ID | 8133136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2522585 |
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| End bp | 2524654 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644865480 |
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| Product | type III secretion outer membrane pore, YscC/HrcC family |
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| Protein accession | YP_003017767 |
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| Protein GI | 253688577 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAAGG GATTGATGCG TCATCGATCG TATAGCATTT TGCTGGTGGT CTATCGCTGG
TTTTGCTGGG CGGTGGTGCT AATGGGGATT ATCCCTATGA ATGGGGTGAT TTCTCTGGCG
CACGCCGCTA CGCCAGCCGA CTGGAACAAG GGGGCGTACG CCTATTCTGC CGAACAAACA
CCGCTGTCTG CGATTCTGAC GGATTTTGCC AACAGCCACG GCGTAGATTT GGTGCTGGGC
AACATTGCGG ACAATGACGT CACGGCGAAA ATTCGGGCGG AGACTCCCGT GCTGTTTCTC
GACAGGCTGG CGTTGGAGCA CCGTTTTCAG TGGTTTGTGT ATAACAACGC ACTGTATGTC
AGCCCGCAGG ATGAACAGGC ATCGGTGCGT CTGGAGATTT CCCCGGATGC CGCGCCTGAT
ATTAAACAGG CGCTCAGTGG TATCGGGCTG CTCGATGCGC GCTTCGGCTG GGGGGAGTTA
CCGGAAGAAG GTGTAGTGCT GGTCACCGGC CCGCAGGCGT ATATCGATCT GATCCGTAAT
TTTAGCCAGC AGCGGGAAAA ACAGGACGAA CGGCGTAAGG TCATGATTTT TCCTTTGCGC
TATGCCTCGG TATCCGACCG GACGCTGCAA TATCGCGATC AGAAGGTTAC CATTCCCGGC
GTTGCGACCA TTCTCAATGA GTTGATGGAT GGTCAGCGTG CGGCACCGGC GGGCGCATCG
GGGCCGATGC CTGTGCAGCC GGATACGGGG ATGGAAGCGA TGCGGGACAG CACGCGTTCG
CTGATGACCC GCCTGGCAAC CCGTAATAAT CCAGGTCGCA GTGGGGATGC ATCGAGCCGC
GTGACGCTAA GTGGCAAGAT TTCTGCCGAT GTACGCAATA ACGCGTTGTT GATTCGGGAT
GATGAAAAAC GCCGGGCGGA GTATCAGCAG CTCGTCGATC ATATTGATGT GCCGCAAAAT
CTGGTCAACA TTGATGCCAT TATTCTGGAT GTGGACCGTA CCGCTCTGTC GCGGCTGGAA
GCAAACTGGC AGGCGCAGCT CGGCAATGTG AGCGCGGGCA GTACCATGAT GATGGGGCGA
AGCACCCTGT TTGTCAGCGA TTTCAAACGC TTCTTCGCCG ATATTCAGGC GTTGGAAGGG
GAAGGAACGG CCTCCATTGT CGCTAATCCT TCCGTACTGA CGCTGGAGAA TCAGCCCGCG
ATTGTCGATT TCAGCCGGAC GGCATTTATC ACAGCGACGG GCGAACGTGT TGCAGACATT
CAACCAGTGA CTGCTGGCAC TAGCCTGCAG GTAACGCCGC GTGTGGTCGG CGAAGGCGCA
CAGCGCAGCA TCCAGTTGGT TATTGATATC GAAGATGGTC AGGTTGAGAC AGGGCGCGAA
GGTGAAGCGT CGGGCGTGAA GCGGGGTACG GTCAGCACGC AGGCGCTGAT TGGTGAGAAC
CGTGCGCTGG TGCTGGGTGG TTTCCACGTC GAGGAGAGCG GCGATCGCGA TCGTCGCATT
CCGATCCTTG GGGATATCCC GCTGTTGGGG AAACTGTTTA CCTCGACGCG CCACGAAGTC
TCCCGCCGTG AACGCCTGTT TATCCTGACG CCGCACCTTG TCGGCGATCA AACCGATCCC
ACGCGCTACG TTTCCTCCGC CAATCGCCAG CAGTTGAACG GTGCGATGAA TCGCGTCGCG
CAGCGCAACG GTAAAACGGA TCTCTATAGC CTGATTGAAG GCGCCTTTCG CGATCTCGCC
AGCCGTCAGC TTCCCGCCGG ATTTAAGACT GTCAGCAACG GCGCGCGATT GGGTGAGGTG
TGTCGCTCGC AGTCAGGCCT GATCTACGAC AGCTCTCGCT ATCAGTGGTA CGACAACGGT
CAGGTGCGCC TGAGCGTCGG CGTTGTGCGC AACGGCGGAA CACAGCCGCA GCGTTTTGAT
GAGGCCGCCT GTGCCAGTAG CCGCACGCTG GCGGTAGCCG TATGGCCAAA AACGACGCTG
GCACCGGGGG AATCCAGCGA GGTATTCCTG GCGTTGCAAC CCGCGCTCGC GTCTCAGACC
GCCCGGCGTC ATGTACTGAC ATCTCGATAA
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| Protein sequence | MRKGLMRHRS YSILLVVYRW FCWAVVLMGI IPMNGVISLA HAATPADWNK GAYAYSAEQT
PLSAILTDFA NSHGVDLVLG NIADNDVTAK IRAETPVLFL DRLALEHRFQ WFVYNNALYV
SPQDEQASVR LEISPDAAPD IKQALSGIGL LDARFGWGEL PEEGVVLVTG PQAYIDLIRN
FSQQREKQDE RRKVMIFPLR YASVSDRTLQ YRDQKVTIPG VATILNELMD GQRAAPAGAS
GPMPVQPDTG MEAMRDSTRS LMTRLATRNN PGRSGDASSR VTLSGKISAD VRNNALLIRD
DEKRRAEYQQ LVDHIDVPQN LVNIDAIILD VDRTALSRLE ANWQAQLGNV SAGSTMMMGR
STLFVSDFKR FFADIQALEG EGTASIVANP SVLTLENQPA IVDFSRTAFI TATGERVADI
QPVTAGTSLQ VTPRVVGEGA QRSIQLVIDI EDGQVETGRE GEASGVKRGT VSTQALIGEN
RALVLGGFHV EESGDRDRRI PILGDIPLLG KLFTSTRHEV SRRERLFILT PHLVGDQTDP
TRYVSSANRQ QLNGAMNRVA QRNGKTDLYS LIEGAFRDLA SRQLPAGFKT VSNGARLGEV
CRSQSGLIYD SSRYQWYDNG QVRLSVGVVR NGGTQPQRFD EAACASSRTL AVAVWPKTTL
APGESSEVFL ALQPALASQT ARRHVLTSR
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