Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2188 |
Symbol | |
ID | 8133132 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2518230 |
End bp | 2520200 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644865476 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_003017763 |
Protein GI | 253688573 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.33539 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAACA GTACAGGATT ACAGTTCACC GTTAAGGTCG GTGCCCTGGC GGCAGGCACT TTTGCAGTGG TGGATTTCAG GCTGGATGAA GGATTGAACC GGCCTTTCAG CCTGTCGCTA AGTCTGGCGA GCGCACAGCC GGATGTGGAT TTCGGCGCGG TGCTGGACCA GCCGTGCGAG CTGATGATTT GGTATGAAGG CGAGCTGAAG CGCCGGGTCA GCGGGATTGT CAGTGGCTTC ACGCAGGGCG ACACCGGTTT TCGGCGCACG CGCTATCAGA TAGACGTCCG TCCGGCGCTG TGGCGACTGG GGCTGCGCAC CAATGCTCGT ATTTTTCAGG CACAGACGCC GGATGCGATT ATCAGCATGC TGCTGGAAGA GGCTGGAATC ACTGACTACG CCTTTGCGCT GCGCAATGAG CACGCAGTGC GGGAATATTG CGTGCAGTAC CGGGAAAGCG ATTTGGCGTT TGTCACCCGT CTGGCCGCCG AGGAGGGCAT GTATTTCTTC CACGAATACG AAGAGGGTAA ACACCGGGTG GTGTTTGCCG ACGACGCCGG GGCGCTGACC AAAGGCCCGG AGCTGTTCTT CAATCTGGCG ACACAAGGGC TGAGCGAGGG GGAATACATT CGGCGCTTCC ACTACGCAGA GCGGGTGAGC ACTGCCGAAG TCGAGTTGAA AGACTACAGC TTCAAAACGC CGGCTTACGG GCTGTCACAC AAGAAGATGA GCGGTGAACT TGAGCACCAG CGTGAAAGCT ACCAGCATTA CGATTATCCG GGGCGCTATA AGCAAGACCC GAGCGGCAAG GCGTTCAGCG GCTACCGGCT GGATGCGCTG CGGTCAGGGG CGGTGACGGG CGAAGGGGAA TCCAACTGTG CGGGGCTGAT GCCGGGCAGT ACGTTTACCC TGACGGAGCA TCCGAATACG ACGCTGAATG CGGTCTGGCA GACGGTGAGC GTGACGCACG TCGGGCAACA GCCGCAGGCG CTGGAAGAGG AAAGCGGTGG TGAACCGACC ACGATGAGTA ACAGTTTTGC GGTGGTGAAA GGGACAACAA CGTGGCGCAC CGCGATGCCG TATAAACCGA TGGTGGACGG CCCGCAAATC GCCACTGTTG TCGGTCCGGC TGGGGAAGAA ATCTACTGTG ACCCGTATGG TCGGGTGAAA CTGCAATTCC CGTGGGACAG ATACGGCGCC AGTAACGACC AGAGCTCCTG CTGGGTGCGC GTCAGTCAGG GCTGGGCGGG CGGTCAGTAC GGCATGATTG CTATCCCCCG TATCGGCCAT GAAGTGATCG TCAGCTTCCT GGAGGGCGAT CCGGATCAGC CGATTGTCAC CGGGCGGACG TTCCACGTCA CTAATCCGTC TCCCTATCCG CTGCCTGCCA ACAAAACACG GACCACGCTT CGTTCCAAAA CCCATAAAGG CAAAGGCTTT AACGAACTCA GCTTCGAGGA TGCGACCGAC AACGAAGAGA TCTTCCTTCA TGCCCAGAAG AATATGGCTG TGCGGGTACT GAATTCCAAA GATGAGCGCG TGGACTATAA CCGCACGACG AGCATCGGAC ATGATGAAGA ACTGGTGGTC GCCAACAATC GTAAAATCAC GGTGGAAGGC AATCAGGATC ACAAAACCAC CGGCAACCAT TTATCGCTGA CCGAAGGCGA TAGCGGCATA CAGGTTAAGG GCGATCTGAC GCAGAAAATC AACGGAGTAT TCAGCGTAGA CAGCAACGGC GATCTGACGC TGCAAAGCGG CAGCAAACTG ACGCTCCGCG TCGGAAGCAG CTTTGTGGTA ATCCACGCTG GTGGAGTGGA CATCAAAGGG CCAGCCATCA ACCTGAATTC AGGCGGCAGT CCGGGCGATG TTGCCCTCCC TGCTGACCCG GCGATATTGA AAGCAGCGGC GGCCGCAGGG ACGATGTTTG TGGCGCACTG TCCGGCAAAG GAGAAAGAAA ACAGTGAGTG A
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Protein sequence | MANSTGLQFT VKVGALAAGT FAVVDFRLDE GLNRPFSLSL SLASAQPDVD FGAVLDQPCE LMIWYEGELK RRVSGIVSGF TQGDTGFRRT RYQIDVRPAL WRLGLRTNAR IFQAQTPDAI ISMLLEEAGI TDYAFALRNE HAVREYCVQY RESDLAFVTR LAAEEGMYFF HEYEEGKHRV VFADDAGALT KGPELFFNLA TQGLSEGEYI RRFHYAERVS TAEVELKDYS FKTPAYGLSH KKMSGELEHQ RESYQHYDYP GRYKQDPSGK AFSGYRLDAL RSGAVTGEGE SNCAGLMPGS TFTLTEHPNT TLNAVWQTVS VTHVGQQPQA LEEESGGEPT TMSNSFAVVK GTTTWRTAMP YKPMVDGPQI ATVVGPAGEE IYCDPYGRVK LQFPWDRYGA SNDQSSCWVR VSQGWAGGQY GMIAIPRIGH EVIVSFLEGD PDQPIVTGRT FHVTNPSPYP LPANKTRTTL RSKTHKGKGF NELSFEDATD NEEIFLHAQK NMAVRVLNSK DERVDYNRTT SIGHDEELVV ANNRKITVEG NQDHKTTGNH LSLTEGDSGI QVKGDLTQKI NGVFSVDSNG DLTLQSGSKL TLRVGSSFVV IHAGGVDIKG PAINLNSGGS PGDVALPADP AILKAAAAAG TMFVAHCPAK EKENSE
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