Gene PC1_2182 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2182 
Symbol 
ID8133126 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp2512694 
End bp2514163 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content57% 
IMG OID644865470 
ProductPectate lyase 
Protein accessionYP_003017757 
Protein GI253688567 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0866134 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGATA TGACGATTAC GCTCAGCATA CAACCCGGCG CAGGCCTGTC CTCAACAGGC 
CTGAATTCCC CGCTTTCAGG CAGCAACAGC GGGGCATCGC AACGCTCTGC ACAGCAAGAT 
AGCCAGCTCA TGGAGGCACT GGGCACCCTG CTCAGCGCGC TCTTGCCTAA TGCACAGGGC 
AATACACCGT CCTCGACCGA TGGCAGCCCG CTAGGCCAGA CGGGCGCGGG CAACGGAGGG 
AGCTCGGCGT TAGGACAAAA CGGCAGCCCC GCCGATATGC TGATGAAACT GTTGGAAGCG 
CTAATTCCAG GGAAAAACGG GCAGGAAGCA GGGAATCCGC TCTCTTCCGG TTCGTCGGGT 
GCGGCAGGTG GCAATAGTGG TGCCTCACCG CTGACGGGAT CATCTGGCCC TGGTGGCGCA 
GGTAGCGCAC AAAACCCAGA AGATCTGAGC CGCTCTCTGC TGCAAGATTC GGCTGGCAGC 
GCATTAGATA ATGCCATTAG CCCAACGGCG GACGGCGGCG GCCAACTGAG CGGTAACGAT 
CTGTTAAAAG CGCTGCTGGA ATTGATCGGC AATCTGATGG ATTCACAGAA AGGTGAGTTT 
GGCCAACCGC AAGGTAGCGG CCAATCCCAA GGTGGCGGAT CGCCGTCAGT GGGCGCACCG 
CAGGCTGCAT CCGGCGGTGG CGGTGGATCG CCTGCCGCAC CGTCTGCTGG CGGCGGCGGT 
TCACCTGCTG CACCATCAGC GCCCGCTTCA CCCGTTGGAG GCGGCGGCGC AGCACCCGCT 
CCACTAACGG CCACACCATC TGGCATTGGT GGCGGTTCGG CAACATCCCC CACGACATCA 
ACAGCAGGTG CTGGCCCAGT CTCTTTCCCA ACCGCCAGCG GTGATGCCAC CGTGGTAAAT 
GAAACCATTA AAGTCGGCCC CGGCGAAACC TTTGACGGCG GTGGTAAAAC CTTTACTGCT 
GGCAGCAAGT TAGGTGACGG CGGCCAGGCT GAAGGCCAGA AACCAGTATT TGAGCTGGCT 
CCGGGCGCGA CGCTGAAAAA TGTGGTGTTT GGTGATAACG CAGCGGATGG TGTGCACGTT 
CGCGGCGATG CCAAGATTGA TAACGTACAC TGGACCAACG TGGGTGAAGA TGCGCTGACG 
GTGAAATCCA ATACCGGCAA ACCTGCTAAC GTGGAAATCA CCAACAGTAG CGCTCAGGGT 
GCTGCCGACA AGATTTTCCA GTTGAACGCA GACGCCAATC TGACCATCGA TAATTTCAAA 
GCGAAAGATT TCGGTACATT TGTTCGCACC AACGGCGGAC AACAGGGTAA CTGGAATTTG 
AACCTGAGTA ACATTGATGC AGAAAACGGC AAGTTCTCAT TCGTGAAAAG CGACAGTGAA 
GGGTTGAACG TTAAAGGCAG CAATATCAAC CTGACGAATG TCAATAATCA CTACAAAGTG 
CCTGACTCCG CCAACTTGCA GGTGAATTAA
 
Protein sequence
MADMTITLSI QPGAGLSSTG LNSPLSGSNS GASQRSAQQD SQLMEALGTL LSALLPNAQG 
NTPSSTDGSP LGQTGAGNGG SSALGQNGSP ADMLMKLLEA LIPGKNGQEA GNPLSSGSSG 
AAGGNSGASP LTGSSGPGGA GSAQNPEDLS RSLLQDSAGS ALDNAISPTA DGGGQLSGND 
LLKALLELIG NLMDSQKGEF GQPQGSGQSQ GGGSPSVGAP QAASGGGGGS PAAPSAGGGG 
SPAAPSAPAS PVGGGGAAPA PLTATPSGIG GGSATSPTTS TAGAGPVSFP TASGDATVVN 
ETIKVGPGET FDGGGKTFTA GSKLGDGGQA EGQKPVFELA PGATLKNVVF GDNAADGVHV 
RGDAKIDNVH WTNVGEDALT VKSNTGKPAN VEITNSSAQG AADKIFQLNA DANLTIDNFK 
AKDFGTFVRT NGGQQGNWNL NLSNIDAENG KFSFVKSDSE GLNVKGSNIN LTNVNNHYKV 
PDSANLQVN