Gene PC1_2169 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2169 
Symbol 
ID8133113 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp2481421 
End bp2482173 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content49% 
IMG OID644865457 
ProductOligogalacturonate-specific porin 
Protein accessionYP_003017744 
Protein GI253688554 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.847115 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAC GCTACCTTGT GGCCGGTATT CTCTTTGCCC AAATTTATGC TATTTCCGCC 
TCTGCCTCTG ATACCAAACT CAGCTATGAA CATAGCTGGG GAACGATGAA TCGCTACCAC 
GGTGATCAAA TCGGCATGCG GCATTTTATG GATAATGGCC TGTACGTTGG CGTTGAGCTG 
AACTTTTATA ATAAGAATAA AGATCTGACC ATCGATGATG TCGTCTCAAA TTCTTATGCT 
TTTTATACCG GCTATGCCTA CAGCTTAACG CCTGAACTAA CCTTAACGCC GAATCTGGAA 
GCGCGCTTCT ACTCCGGCGG CACCAGCGGT GAAGGTACCG TAGGCGATAT CGGCGCCAGC 
CAGAGTTCCG GCGCACGCTA TACGCCAGGT TTGAAACTGA CCTGGGCGGT GACTGACAAG 
ACGGATCTTC ATGCGCAATA TCGCTATGAC CTCAGAAAAA TCACCCGCAG CAAGCGTACC 
AGCACGGATG ATGATACCCA CCGTCACCGC TATGAAGCGG GTGTGGCCTA CAAGGGTTTC 
GGTAACTTCA CACTGGCGTA CACCGCTTAC TACTATCACG CGGATTATGT GCTGCAAAAC 
AACAAAAAGC ATGATTATCA GCAGGATTTT GATGTGTCTT ACACCATCAA CGACAACTGG 
ACGGCACACG TTGGCGTTGA AGATGTCGCC AGCGGGCGCG ATGTGAAATC GCGTGAAGGA 
AAAGGGAAAG TCGGCTTCAC CTATACGTTC TAA
 
Protein sequence
MKKRYLVAGI LFAQIYAISA SASDTKLSYE HSWGTMNRYH GDQIGMRHFM DNGLYVGVEL 
NFYNKNKDLT IDDVVSNSYA FYTGYAYSLT PELTLTPNLE ARFYSGGTSG EGTVGDIGAS 
QSSGARYTPG LKLTWAVTDK TDLHAQYRYD LRKITRSKRT STDDDTHRHR YEAGVAYKGF 
GNFTLAYTAY YYHADYVLQN NKKHDYQQDF DVSYTINDNW TAHVGVEDVA SGRDVKSREG 
KGKVGFTYTF