Gene PC1_2168 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2168 
Symbol 
ID8133112 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp2480471 
End bp2481289 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content45% 
IMG OID644865456 
ProductOligogalacturonate-specific porin 
Protein accessionYP_003017743 
Protein GI253688553 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAT ACACACGTAA CCTACTCATC GTTTTTGCCG GATTCGCTCC TTTCCTCACT 
CAGGCAGAAA CCGACGGCAA AACTACCTTT CAGTACGAAC ATAACTGGAA GACGGAAGAC 
CGCCGCCACG CAGACTCCAT CAAGCTCATT CACAAGAAAA CCAACGGCTG GTCGTACGAA 
GTCAAATTTA GTACGTCAGC AGGCGGGAAC AGCAACTACG ACGTTGCCTA TGATGACATG 
CAGGGCGGTT CTGGCGGCAT GGTGATCGGT AAGGACTTCA AGCTAAGCAA GGCCGCTACC 
TTAACGCCGA GCTTTGAATT CTCCATCGGC AATGCCAGCA TGATGTATCA GCCGGGGCTG 
AAATATAACT ATCGAATTAA CAGCGACTGG TCCACTTATG GCCGCTACCG TTATGAATAT 
AAGAAACCGA CACGTAGCTC GCGTTATTCG ACCATTTCCA CGTCAGATAA ATATGGTCAC 
GCTGGGGAAT CTTATTTATC AAAATCCGAC ACCGGACGCC ACCGTCTGGA TGCTGGGGTA 
ACGTATTCTG GCTTTGATAA TATTAATCTG ACTTACGTCT TTAACTACTA TATCGGCGAT 
AACACCACAA AATCGTATAA ATATAGCAAG GGTGAATTCA CAGAAAGAGA ATACGCCGTC 
TATGACAATG GTAAAACGGA CTATGAGCAT CAGTTCAAAG TTCAATATAA GTTAAACAAA 
CAGCTAACTC CTTACATTGA GTATGATGAT ATTAGCCAAT CCAGCACATC ATCAAGCCGT 
CAGGGGAAAA TCAAAGTTGG TTTCAACTAC GTTTTCTAA
 
Protein sequence
MKIYTRNLLI VFAGFAPFLT QAETDGKTTF QYEHNWKTED RRHADSIKLI HKKTNGWSYE 
VKFSTSAGGN SNYDVAYDDM QGGSGGMVIG KDFKLSKAAT LTPSFEFSIG NASMMYQPGL 
KYNYRINSDW STYGRYRYEY KKPTRSSRYS TISTSDKYGH AGESYLSKSD TGRHRLDAGV 
TYSGFDNINL TYVFNYYIGD NTTKSYKYSK GEFTEREYAV YDNGKTDYEH QFKVQYKLNK 
QLTPYIEYDD ISQSSTSSSR QGKIKVGFNY VF