| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2163 |
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| Symbol | |
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| ID | 8133107 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2471004 |
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| End bp | 2474618 |
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| Gene Length | 3615 bp |
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| Protein Length | 1204 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644865451 |
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| Product | urea carboxylase |
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| Protein accession | YP_003017738 |
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| Protein GI | 253688548 |
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| COG category | [C] Energy production and conversion
[I] Lipid transport and metabolism |
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| COG ID | [COG1038] Pyruvate carboxylase
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain
[TIGR02712] urea carboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.278684 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAAGA CCGTACTGAT CGCTAACCGC GGTGAAATTG CCTGCCGCGC CATACGCACG
CTGAAGCGTT TGGGGATAAC CAGCGTAGCG ATTTATTCCG ATGCGGATAA AAACGCACAG
CATGTGAAAG AGGCAGACAT TGCCGTATCC ATTGGCGGCG AGAAAGCCAG CGACAGCTAT
CTGTGTATCG ATAAGGTACT GGCCGCCGCA CAGCAGACGG GGGCAGAGGC TGTCTGGCCG
GGGTACGGTT TTCTGTCAGA GAGCCTGCCG TTTGCCGCCG CGTGTGAAAA GGCCGGCATT
GCGTTTGTCG GGCCAACCGC CCAGCAAATT GGCGAATTCG GTCTGAAGCA CCGCGCCCGT
GAATTGGCGG CCGCGGCGGG GGTACCGATG ACGCCGGGAA CGCCGCTACT GGCCTCGCTG
GAGGATGCAC TGTCCGCTGC CGAAGACATC GGCTATCCGG TCATGCTGAA AAGTACCGCC
GGAGGCGGCG GCATTGGTCT GACGCGCTGT GCGGATGCCG TGGCACTACA GGCCGCGTGG
GAGAGCGTGC GCCGTTTGGG CGAGCAATTT TTTAGCGATG CAGGCGTCTT TCTCGAACGC
TGTATCGATC GGGCGCGTCA CGTCGAAGTA CAGATTTTTG GCGATGGTAA AGGCCGCGTG
GTGGCGCTGG GCGAACGTGA TTGCTCATTG CAGCGGCGCA ACCAGAAAGT GGTGGAAGAA
ACGCCCGCAC CGCACTTGCC GGACGCTACG CGCGCGGCGC TACTGGCCTC AGCGGTGAAG
CTGGGTGAGC TGGTTAACTA TCGCAGTGCG GGAACGGTGG AGTATATCTA CGATGCCGAA
CGCGATGCGT TCTTTTTCCT CGAAGTGAAT ACCCGTTTAC AAGTGGAGCA TCCGGTGACG
GAGTGTGTCA CCGGGCTGGA TCTGGTCGAA TGTATGTTGC GCGTTGCGGC GGATGAAGCG
CTGGACTGGA CGCCATTGAC GCAGGCACCG CGTGGTGCCG CGATTGAAGT CCGCCTTTAT
GCGGAAGATC CGCTGAAAAA CTTCCAGCCC AGCCCCGGCG TGCTGACCGA AGTGGCGTTT
CCCGACGGCG TGCGGGTCGA CGGCTGGGTA AGCACCGGCA CCGAAGTATC GTCATATTAC
GATCCGATGA TCGCTAAGCT GATCGTTCAT GCGGAAAACC GCGAACTGGC GCTGGAGAAG
ATGCAGCAGG CGCTGAATGC TACGCGTTTG CACGGTATTG CCACCAACCT CGATTACCTG
CGCCAGATTG TCGCTACCGA CGCATTCCGC AACGGAACCG TGTGGACGCG GATGCTCGAC
AGCTTTACAC CGTCTGCCTC GGTGATTGAA GTGATTCAAC CCGGTACCTG GAGCAGCGTG
CAAGACTATC CCGGACGCCT TGGCTATTGG GATATCGGCG TGCCGCCGTC CGGCCCGATG
GACGATTTCG CGTTCCGGTT GGCGAATCGC ATCGTCGGTA ACGATGAGGC CGCCGCAGGG
CTCGAATTTA CGCTACAAGG GCCGACGCTG CGCTTCCACT GCGAGGCAGT GATTGCACTG
ACGGGCGCTG ACTGCCCGGC GATGTTGGAT GGTGAAAAGG TGCCATATTG GCAGCCCGTG
ACGGTAACCG CGGGGCAAAC GCTGACTCTG GGGCGTGCAC AGTCTGGCTG TCGCACCTAT
CTGGCGGTGC GTAACGGCAT CGATGTGCCG CAGTATCTCG GTAGCCGTTC GACGTTCGCG
CTCGGGGAAT TTGGCGGCCA TGCCGGAAGA ACGCTGCGCG TAGCGGATAT GCTGGCGATT
TCTCAACCCC ATTTACCCGC TTGCACCACA CCCGCGCCCG TAAGCGCGCC GCAGGCCGTG
GACGCGGCGC TGATTCCGCA ATACGGCGAT GAGTGGCGTA TTGGCGTGCT CTATGGCCCG
CACGGCGCGC CGGATTTCTT TACCCACGCG GCAATTGATG AGTTTTTCGC GGCAGAATGG
CAGGTGCACT ACAACTCAAA CCGACTGGGC GTGCGTCTGG TCGGGCCAAA ACCTACCTGG
ACGCGGGCGA ACGGCGGCGA GGCGGGTCTG CATCCTTCCA ACGTTCACGA CTGTGAATAC
GCCATCGGCG CAGTGAATTT TACGGGTGAT TTCCCGGTGA TCCTCACGCG TGACGGGCCG
AGTCTGGGCG GATTTGTCTG TCCGGTGACG ATTGCCAAAG CGGAACTGTG GAAAGTCGGT
CAAGTTAAGC CCGGCGATCG TATTCGTTTC CATCCCATCA GCGCGGATGA AGCACTGGCA
TTGGAACAGG CGCAGTCTGA CTGCGTTTCC ACGCTGGGAG CCGCTCACGC GCCTGCGTTT
GACGTCCCCT CGCTGGCGAC GACAGAACAC GGTTCTGCAA CCGTGCTGGC TGCGGTACCG
GCCACCGCGA CTACGCCAGC CGCCGTGTAT CGTCAGGCAG GGGATAACTA CATCCTGATT
GAATACGGCG AGAACGTGCT GGATCTGGCA CTGCGGCTGC GCGTGCATCT GTTAATGGCG
GCGATCCGCA CTTCAGAGAC CGCGGGGATC GAAGAACTGT CGCCCGGCGT GCGTTCGCTA
CAGGTGCGCT ACGACAGTCG GGTTCTCCGT CAACGTGCGC TGCTGGACGT ATTGCTGCAT
CTGGAAAGCC AACTGGGCGA CGTCAGCGAG ATGACAGTGC CGTCGCGTAT CGTCCATTTA
CCGATGGCGT TTGAAGACAG CGCCACGCTC GGCGCGGTGG AACGTTACCG TGAAACCGTA
CGCGCCAGCG CGCCCTGGCT GCCGAATAAT GTCGATTTTA TTCAACGCAT TAATGGCTTG
GCGAGCCGTG ACGACGTGCG CGACATCATT TTTGATGCCA GCTACCTGAT TCTGGGGCTG
GGTGACGTTT ATCTCGGCGC GCCCTGTGCG GTGCCAGTCG ATCCGCGTCA CCGCTTATTG
AGTTCCAAAT ACAATCCGGC ACGCACCTTT ACCGCCGAAG GCACGGTCGG CATCGGCGGC
ATGTACATGT GCATCTATGG CATGGATTCG CCGGGCGGCT ATCAACTGGT GGGGCGCACG
CTGCCTATCT GGAACAAATT CCTCAAAAAC GATCAGTTCA TTACGGATGA ACCCTGGCTG
CTGCGTTTCT TCGACCAGGT GCGGTTTTAT CCGGTCAGCG AAGCCGAGCT GACGGCGCTG
CGTGATGACT TCCGTGAAGG ACGCGCCGCG ATTCGCATCG AAGAAACCGA GTTTGATTTT
GCTGAACACT CACGTTTCCT GACGGAGCAG GCCGACGACA TTGCCGCTTT CCGTCATCGT
CAGGCCACGG CGTTTGAAAC AGAAGTCGCG CTGTGGCAGC AGGAGGATGA GAGTACACCG
CAGGAAATCG TTTCTACCGC GCCTGTGGAG AACGACGAGA GCGCGTTTCA GGTGAGTGCG
GACATGAACG GCAATATCTG GAAAGTGCTG GTGAACGTGG GGGATGCTAT CGAAGCCGGG
CAGCCACTGA TTATCGTCGA AGCCATGAAG ATGGAACTGA CGATTAGCGC GCCGCAGTCT
GGTCGGGTGA AACGCATCGG CTGCCAGCCG GGTCGACCGG TCAGCCCCGG CGATGCGTTG
CTATGGCTGG AGTAA
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| Protein sequence | MFKTVLIANR GEIACRAIRT LKRLGITSVA IYSDADKNAQ HVKEADIAVS IGGEKASDSY
LCIDKVLAAA QQTGAEAVWP GYGFLSESLP FAAACEKAGI AFVGPTAQQI GEFGLKHRAR
ELAAAAGVPM TPGTPLLASL EDALSAAEDI GYPVMLKSTA GGGGIGLTRC ADAVALQAAW
ESVRRLGEQF FSDAGVFLER CIDRARHVEV QIFGDGKGRV VALGERDCSL QRRNQKVVEE
TPAPHLPDAT RAALLASAVK LGELVNYRSA GTVEYIYDAE RDAFFFLEVN TRLQVEHPVT
ECVTGLDLVE CMLRVAADEA LDWTPLTQAP RGAAIEVRLY AEDPLKNFQP SPGVLTEVAF
PDGVRVDGWV STGTEVSSYY DPMIAKLIVH AENRELALEK MQQALNATRL HGIATNLDYL
RQIVATDAFR NGTVWTRMLD SFTPSASVIE VIQPGTWSSV QDYPGRLGYW DIGVPPSGPM
DDFAFRLANR IVGNDEAAAG LEFTLQGPTL RFHCEAVIAL TGADCPAMLD GEKVPYWQPV
TVTAGQTLTL GRAQSGCRTY LAVRNGIDVP QYLGSRSTFA LGEFGGHAGR TLRVADMLAI
SQPHLPACTT PAPVSAPQAV DAALIPQYGD EWRIGVLYGP HGAPDFFTHA AIDEFFAAEW
QVHYNSNRLG VRLVGPKPTW TRANGGEAGL HPSNVHDCEY AIGAVNFTGD FPVILTRDGP
SLGGFVCPVT IAKAELWKVG QVKPGDRIRF HPISADEALA LEQAQSDCVS TLGAAHAPAF
DVPSLATTEH GSATVLAAVP ATATTPAAVY RQAGDNYILI EYGENVLDLA LRLRVHLLMA
AIRTSETAGI EELSPGVRSL QVRYDSRVLR QRALLDVLLH LESQLGDVSE MTVPSRIVHL
PMAFEDSATL GAVERYRETV RASAPWLPNN VDFIQRINGL ASRDDVRDII FDASYLILGL
GDVYLGAPCA VPVDPRHRLL SSKYNPARTF TAEGTVGIGG MYMCIYGMDS PGGYQLVGRT
LPIWNKFLKN DQFITDEPWL LRFFDQVRFY PVSEAELTAL RDDFREGRAA IRIEETEFDF
AEHSRFLTEQ ADDIAAFRHR QATAFETEVA LWQQEDESTP QEIVSTAPVE NDESAFQVSA
DMNGNIWKVL VNVGDAIEAG QPLIIVEAMK MELTISAPQS GRVKRIGCQP GRPVSPGDAL
LWLE
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