| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2151 |
|---|
| Symbol | |
|---|
| ID | 8133095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2459397 |
|---|
| End bp | 2460377 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644865439 |
|---|
| Product | extracellular solute-binding protein family 3 |
|---|
| Protein accession | YP_003017726 |
|---|
| Protein GI | 253688536 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAG AGATTGTCCA CACCATCGCA CAAACGGCCG CAGCCCCGCG CGTACGCGCA
TCGCTTTTGA CAAGGCTACT GACGGGATCG CTGCTGCTCG GCACATTTTT TGTCACGACA
GCACAGGCGG CCATCGACCT GAAAGCCAAT CAGCAGCCGA TCCATGCCCC GAAGAACGCG
GAGGCTATCG CACAGATTCC GGCTGATTTT AAATTCGTCA CACCGGGTAA ATTCACCGTG
GCGATTGCCG CACTGGGTTC GTCACCACCG CTGGCGTTTC TGGCCGACGA CAACAAAACC
GTGGTGGGCA GTGAGCCCGA TATCGCCCGG CTGGTGGCCG ACAGTCTCGG GCTGGAATTG
AACATCGTCC CTACTTCGTG GGAAGACTGG CCGCTCGGTG TGTCCTCCGG CAAGTACGAC
GCTGCCATCA TCAACATTAC CGTCACTAAA GAACGCAAGG AAAAATTTGA TTTCGCCACC
TACCGCGTCG ACTCACTCGG CTTCTATGTG AAATCCACCA GTAAGATTCA GTCCATTAAG
GAAGCGAAAG ACATCGCCGG GCTGAAGATT ATTGTCGGCT CCGGCACTAA TCAGGAAGCG
GTGCTGCTGG CATGGGATAA GCAAAATCGC GCCAACGGCC TGCCCGCCTT TCAGCCGATT
TATGTCACAG ACGATGCGGC GGCCAACCTC AGTCTGCAAT CCGGTCGCTC AGACGCTTAT
TTCGGCCCCA ACGTGATCGG CGCGTACAAA GCAGAGCTAA CCGGCAAGGT TAAGCATGTC
GGTACGGTCA ACGGCGGCTA CCCCAACGTC GCGCATATTG CGGTAACCAC GCGCAAAGGT
AGCGGGCTGG TACAGCCGAT TAATACGGCG CTGAACGGCG TGATTAAAAG TGGCGAATAC
GACCAGGTGC TAAACCGCTG GGGAGAAAGC ATTGAGCGTA TCGATCGTTC AGAAATCAAT
CCACCGGGAC TGGGCGATTA A
|
|---|
| Protein sequence | MQKEIVHTIA QTAAAPRVRA SLLTRLLTGS LLLGTFFVTT AQAAIDLKAN QQPIHAPKNA
EAIAQIPADF KFVTPGKFTV AIAALGSSPP LAFLADDNKT VVGSEPDIAR LVADSLGLEL
NIVPTSWEDW PLGVSSGKYD AAIINITVTK ERKEKFDFAT YRVDSLGFYV KSTSKIQSIK
EAKDIAGLKI IVGSGTNQEA VLLAWDKQNR ANGLPAFQPI YVTDDAAANL SLQSGRSDAY
FGPNVIGAYK AELTGKVKHV GTVNGGYPNV AHIAVTTRKG SGLVQPINTA LNGVIKSGEY
DQVLNRWGES IERIDRSEIN PPGLGD
|
|---|
| |