| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2141 |
|---|
| Symbol | |
|---|
| ID | 8133085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2447022 |
|---|
| End bp | 2448482 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644865429 |
|---|
| Product | PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC |
|---|
| Protein accession | YP_003017716 |
|---|
| Protein GI | 253688526 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific |
|---|
| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAGA ATTATGCGGC TGTATCCCGT TCGATCGTCG ATGCCATCGG TGGTGCTGAT
AACATCGCCG CCGTGACACA CTGTATGACC CGCCTGCGCT TCGTGTTGAA AGATAATGAT
GCAGCGAATG TGGCCGAACT GAAGGCAATA AGCGGCGTGT TGGGCGTCGT GAAAAACGAT
AACCAGTGTC AGGTCATTAT CGGCAACACC GTTTCTCAGG CCTATGCCGA GGTGGTGAAG
CTGCTGCCGG AAGGCGTGGC GGCGGAAAAA GCGGTGCCGG TGAACAATAA AATTACGCTG
CGACGCATTG GTGCGGGCAT TCTGGATGCG CTGATTGGTA CGATGTCACC GCTCATTCCG
GCGATTATCG GCGGGTCGAT GGTAAAACTG CTCGCCATGA TTCTGGATAT GACCGGCATA
TTTGAGAAGG GCTCTTCCAC GCTGACGATT CTGAACGTGA TTGGCGACGG TGCATTCTTC
TTCCTGCCGA TCATGGTGGC AGCATCTGCG GCGGTAAAAT TCAAAACCAA TATGTCGCTG
GCTATTGCTA TCGCTGGGGT GCTGGTGCAT CCGACGTTCA TCGATCTGAT GGCAAAAGCG
GCACAGGGGC AGCAGGTGGT GTTTATGGGG CTGTCCGTCA CCGCGGTGAA GTACACCTAC
ACCGTGATTC CGGCGCTGTG TATGACCTGG ATTCTGTCTT ACATTGAAAA ATGGGTAGAT
CGCATTACGC CTGCGGTCAC CAAGAACTTC CTGAAGCCGA TGTTAATCGT GCTGATTGCC
TCCCCGATTG CCATCATGCT TATTGGCCCG ATTGGAATCT GGATCGGTAG CGGTATTTCT
GCTGTCGTCT ACACCGTGCA TGATTATCTG GGCTGGCTGT CCGTTGCCAT CATGGGCGCT
ATCTGGCCGC TGCTGGTAAT GACTGGTATG CATCGCGTGT TTACCCCGAC TATTATTCAA
ACCATCGCCG AAACGGGAAA AGAAGGCATG GTGATGCCGT CTGAAATTGG CGCGAACCTG
TCGCTTGGTG GTTCTTCACT GGCGGTCGCC TGGCGCACCA AAAACCCGGA ACTGCGCCAG
ACGGCGTTGG CCGCGGCCGC CTCGGCGATT GTTGCTGGGA TCTCTGAACC CGCGCTGTAC
GGTGTAGCTT TGCGCCTGAA GCGTCCGCTG ATTGCCTGTC TAATTACCGG TTTCATCTGT
GGCGCCGTTG CCGGTATCGG CGGGCTGGCC AGTCATTCAA TGGCATCGCC GGGGCTGTTT
ACCAGTGTGC AATTCTTCGA TCCTGCGAAT CCGATGAGCA TTGCCTGGGT GTTCGGCGTC
ATGATTCTGT CTGTCGTGAT TTCTTTCTTC GTCACCTTGC TGCTGGGCTT TGAAGACATT
CCGGTAGAAG AAAAACCGGA AGAGAAACGC GTGCAGGGTG ATGATTTTTC CGCGCCGCAA
CGCGCCACGA ACACGAATTA A
|
|---|
| Protein sequence | MSKNYAAVSR SIVDAIGGAD NIAAVTHCMT RLRFVLKDND AANVAELKAI SGVLGVVKND
NQCQVIIGNT VSQAYAEVVK LLPEGVAAEK AVPVNNKITL RRIGAGILDA LIGTMSPLIP
AIIGGSMVKL LAMILDMTGI FEKGSSTLTI LNVIGDGAFF FLPIMVAASA AVKFKTNMSL
AIAIAGVLVH PTFIDLMAKA AQGQQVVFMG LSVTAVKYTY TVIPALCMTW ILSYIEKWVD
RITPAVTKNF LKPMLIVLIA SPIAIMLIGP IGIWIGSGIS AVVYTVHDYL GWLSVAIMGA
IWPLLVMTGM HRVFTPTIIQ TIAETGKEGM VMPSEIGANL SLGGSSLAVA WRTKNPELRQ
TALAAAASAI VAGISEPALY GVALRLKRPL IACLITGFIC GAVAGIGGLA SHSMASPGLF
TSVQFFDPAN PMSIAWVFGV MILSVVISFF VTLLLGFEDI PVEEKPEEKR VQGDDFSAPQ
RATNTN
|
|---|
| |