Gene PC1_2092 details

Gene Information

• Locus tag: PC1_2092
• ID: 8133036
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 2391541
• End bp: 2392230
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 644865381
• Product: Rare lipoprotein A
• Protein accession: YP_003017668
• Protein GI: 253688478
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG4305] Endoglucanase C-terminal domain/subunit and related proteins

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.4902
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAAAA TAACTTCATT AGCATTATCT GCATTATGCG TTATCCCCCT GATTAATACC 
GCTCACGCCC AGTGGGAACT GGACGACATC TGTTACGGCT ACGCCACTGC AACGGGCTCT 
GGCTATCAGG GCGGCGCGCT CTTGCTGGAT CCGATTCCAC AGAACATGGA GATTACGGCG 
TTAAACCGGA ACCAGTTGGA TTATCGCGGA GTGAAGGCAT CACTGGCCGG AGCCTATCTG 
AAAGTAAACG GGCCAAAAGG CAGTACGGTG GTTTATGTCA CAGACCTTTA CCCTGAAGGT 
GGAGATTGTG CATTAGATTT ATCGTTTAAC GCCTTTGAAA AAATAGGCGA TCTACGGGAT 
GGGAAAATTA ATATCGACTG GACGCTCATT GAAGCGCCGG TAAATGGCAA CGTTATTTAC 
CGTATAAAGG AAGGGTCAAA TCCTTATTGG GCTGCGGTGC AATTCAGAAA TGTAAAATAT 
CCGGTTATTG AGATGAAATA TATGCGCAAT AACCAGTGGA TTCCCGCCCA GAAAACCGAT 
TACAACCACT TTATTGTTGA ACACGTTGGA ATGAACGATA TTCCTATTGA GTTTACCGAC 
GTAAAAGGCA ACGTCCTAAG TGATACACTG CCGCCGATGT CACAAAGCAC CTCATCTGCT 
TACCTGATCA CGGGCAACGT CCAGCTTTAA 

 

Protein sequence

MNKITSLALS ALCVIPLINT AHAQWELDDI CYGYATATGS GYQGGALLLD PIPQNMEITA 
LNRNQLDYRG VKASLAGAYL KVNGPKGSTV VYVTDLYPEG GDCALDLSFN AFEKIGDLRD 
GKINIDWTLI EAPVNGNVIY RIKEGSNPYW AAVQFRNVKY PVIEMKYMRN NQWIPAQKTD 
YNHFIVEHVG MNDIPIEFTD VKGNVLSDTL PPMSQSTSSA YLITGNVQL