Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2060 |
Symbol | |
ID | 8133004 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2365440 |
End bp | 2366822 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644865350 |
Product | diaminobutyrate--2-oxoglutarate aminotransferase |
Protein accession | YP_003017637 |
Protein GI | 253688447 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
TIGRFAM ID | [TIGR00709] 2,4-diaminobutyrate 4-transaminases |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00222981 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGGATA AAGTCCGTAT TGACAGTTTA GGTGCGAATT CATTAACCGG AAACAATGAA ACCTATTTGG CAAGACAAGC TGAATTTGAA TCGAACGTGA GGAGTTATCC ACGCAAATTG CCTCTGGCAA TTGCGAAAGC TGAAGGCGTG TGGATCACTG ATGTTGAGAA TAATCAATAT CTTGATTGTC TGGCGGGTGC GGGTACGCTC GCGCTGGGGC ACAACCATCC TGACGTGCTG CAAAGCATCC AAAGTGTCAT TACTAGCGGC TTGCCGTTAC ATACACTTGA TCTGACAACG CCGTTGAAAG ATCAGTTCTC CGAATACCTG CTTTCCTTAT TGCCTGGCCA AGGCAAAGAG TACTGCCTCC AGTTTACGGG CCCGTCTGGC GCCGATGCGG TTGAAGCCGC GCTGAAACTG GCAAAAAAAT ACACTGGCCG TTCTGGTGTG ATCAGCTTCT CCGGCGGCTA TCACGGCATG ACGCATGGCG CGCTGTCCGT AACCGGTAAC CTGTCTCCGA AAGAAGCCGT CGACGGCATG ATGCCTGAAG TCCAGTTTAT GCCTTACCCG CATCAATACC GCTGCCCGCT GGGCATTGGC GGTGAAGCTG GCGTTAAAGC ATTAACCTAC TATTTCGAAA ACCTGATCAA CGACGTTGAG AGTGGCGTAC GCAAACCGGC GGCTGTCATT CTGGAAGCCG TTCAGGGTGA AGGCGGCGTT AACCCGGCAC CTGCCGAGTG GTTACAGCGC ATCCGTAAAG TGACGCAGGA ACACGGTATT CTTCTGATCA TCGACGAAGT TCAGGCTGGT TTTGCTCGTA CCGGTAAATT CTTCGCCTTT GAACACGCCG GCATTGAGCC CGATATCATC GTGATGTCCA AAGCCGTTGG TGGCGGTTTG CCATTAGCCG TATTGGGTAT CAAGAAGCAG TTCGATGCCT GGGCACCGGG TCACCACACG GGGACTTTCC GCGGTAACCA ACTGGCGATG GCAACCGGCC TGACGACGCT GAAGCACCTG AAAGATAATC AGGTGGCAAA CAAAGTCGCC GAGCAAGGTG AATGGCTGAA AGCCAAACTG GCTGAGCTGC AAAAACGCTA TCCGGTGATC GGTCACATTC GCGGTCTGGG ATTAATGATC GGGATTGAGA TTGTTAAACC TGGCGAAGCG CAGGATCACA TGGGTTGCTA TCCGGCTGAC GGCGAGCTGT CTGCCCTGTT GCAGAAAAAA TGCTTTGAAT CAGGCCTGAT TCTGGAGCGC GGTGGCCGTA ACGGTTGCGT TCTGCGTCTG CTGCCTTCCC TGCTGATCAG CAATGCTGAA TTGGAAATCT TCCTGGATAA ATTTGAAAAC GCCCTGCTGT CTGCTGGCGT GAAGCCAGTC TGA
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Protein sequence | MTDKVRIDSL GANSLTGNNE TYLARQAEFE SNVRSYPRKL PLAIAKAEGV WITDVENNQY LDCLAGAGTL ALGHNHPDVL QSIQSVITSG LPLHTLDLTT PLKDQFSEYL LSLLPGQGKE YCLQFTGPSG ADAVEAALKL AKKYTGRSGV ISFSGGYHGM THGALSVTGN LSPKEAVDGM MPEVQFMPYP HQYRCPLGIG GEAGVKALTY YFENLINDVE SGVRKPAAVI LEAVQGEGGV NPAPAEWLQR IRKVTQEHGI LLIIDEVQAG FARTGKFFAF EHAGIEPDII VMSKAVGGGL PLAVLGIKKQ FDAWAPGHHT GTFRGNQLAM ATGLTTLKHL KDNQVANKVA EQGEWLKAKL AELQKRYPVI GHIRGLGLMI GIEIVKPGEA QDHMGCYPAD GELSALLQKK CFESGLILER GGRNGCVLRL LPSLLISNAE LEIFLDKFEN ALLSAGVKPV
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